Mercurial > repos > iracooke > protk_blast
changeset 0:88ada6a29993
Uploaded
| author | iracooke |
|---|---|
| date | Mon, 04 Mar 2013 04:18:28 -0500 |
| parents | |
| children | 0d86d29aaed6 |
| files | repository_dependencies.xml tool_dependencies.xml |
| diffstat | 2 files changed, 32 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/repository_dependencies.xml Mon Mar 04 04:18:28 2013 -0500 @@ -0,0 +1,9 @@ +<?xml version="1.0"?> +<!-- <repositories description="protk-omssa requires the protk rubygem to install omssa"> + <repository toolshed="http://10.211.55.28:9009" name="galaxy_protk" owner="iracooke" changeset_revision="2562efef05cb"/> +</repositories> + --> + + <repositories description="Requires the protk rubygem to install omssa"> + <repository toolshed="http://toolshed.g2.bx.psu.edu" name="galaxy_protk" owner="iracooke" changeset_revision="51f7c347c955"/> +</repositories> \ No newline at end of file
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Mar 04 04:18:28 2013 -0500 @@ -0,0 +1,23 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="blast" version="2.2.27"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://dl.dropbox.com/u/226794/galaxy_protk.tar.gz</action> + <action type="shell_command">sh install_blast.sh $INSTALL_DIR 1.1.9</action> + <action type="move_file"> + <source>install_blast.sh</source> + <destination>$INSTALL_DIR</destination> + </action> + <action type="set_environment"> + <environment_variable name="PROTK_BLAST_ROOT" action="set_to">$INSTALL_DIR</environment_variable> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + <readme> + Installs OMSSA via the protk installer + </readme> + </package> + +</tool_dependency> \ No newline at end of file