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diff scripts/modules/seq_conf/escherichia_coli/typing.config @ 0:c6bab5103a14 draft

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"planemo upload commit 6abf3e299d82d07e6c3cf8642bdea80e96df64c3-dirty"
author iss
date Mon, 21 Mar 2022 15:23:09 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/scripts/modules/seq_conf/escherichia_coli/typing.config	Mon Mar 21 15:23:09 2022 +0000
@@ -0,0 +1,20 @@
+#reference_file (fasta file full path)
+escherichia_coli.fasta
+#length_extra_seq (int)
+0
+#maximum_number_absent_genes (int)
+1
+#maximum_number_genes_multiple_alleles (int)
+1
+#minimum_read_coverage (x, int)
+25
+#minimum_depth_presence (x, int)
+5
+#minimum_depth_call (x, int)
+10
+#minimum_depth_frequency_dominant_allele (0-1, double)
+0.60
+#minimum_gene_coverage (0-100, int)
+60
+#minimum_gene_identity (0-100, int)
+70