Mercurial > repos > iuc > busco

annotate test-data/genome_results/short_summary @ 19:2a5b8b9936bf draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
author iuc
date Tue, 14 Nov 2023 13:03:37 +0000
parents bb935709506a
children ea8146ee148f
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
iuc
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1 # BUSCO version is: 5.5.0
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2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013)
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpbmq1q2c6/files/8/e/b/dataset_8eb218b1-f367-4315-9915-554c009808cb.dat
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4 # BUSCO was run in mode: euk_genome_aug
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5 # Gene predictor used: augustus
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7 ***** Results: *****
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9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013
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10 1 Complete BUSCOs (C)
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11 1 Complete and single-copy BUSCOs (S)
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12 0 Complete and duplicated BUSCOs (D)
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13 0 Fragmented BUSCOs (F)
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14 1012 Missing BUSCOs (M)
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15 1013 Total BUSCO groups searched
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17 Assembly Statistics:
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18 1 Number of scaffolds
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19 1 Number of contigs
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20 62370 Total length
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21 0.000% Percent gaps
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22 62 KB Scaffold N50
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23 62 KB Contigs N50
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26 Dependencies and versions:
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27 hmmsearch: 3.1
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28 bbtools: 39.01
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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parents: 16
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29 makeblastdb: 2.14.0+
2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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30 tblastn: 2.14.0+
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31 augustus: 3.5.0
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32 gff2gbSmallDNA.pl: None
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33 new_species.pl: None
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34 etraining: None
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
iuc
parents: 16
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35 busco: 5.5.0