Mercurial > repos > iuc > busco
annotate test-data/genome_results/short_summary @ 16:bb935709506a draft
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
| author | iuc |
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| date | Thu, 12 Jan 2023 13:28:58 +0000 |
| parents | 2dd755c1c6ff |
| children | 2a5b8b9936bf |
| rev | line source |
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bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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1 # BUSCO version is: 5.4.4 |
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2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) |
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprqvmp912/files/000/dataset_22.dat |
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4 # BUSCO was run in mode: euk_genome_aug |
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5 # Gene predictor used: augustus |
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6 |
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7 ***** Results: ***** |
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8 |
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9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013 |
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10 1 Complete BUSCOs (C) |
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11 1 Complete and single-copy BUSCOs (S) |
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12 0 Complete and duplicated BUSCOs (D) |
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13 0 Fragmented BUSCOs (F) |
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14 1012 Missing BUSCOs (M) |
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15 1013 Total BUSCO groups searched |
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16 |
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17 Assembly Statistics: |
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18 1 Number of scaffolds |
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19 1 Number of contigs |
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20 62370 Total length |
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21 0.000% Percent gaps |
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22 62 KB Scaffold N50 |
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23 62 KB Contigs N50 |
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24 |
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25 |
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26 Dependencies and versions: |
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27 hmmsearch: 3.1 |
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28 bbtools: 39.01 |
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29 makeblastdb: 2.13.0+ |
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30 tblastn: 2.13.0+ |
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31 augustus: 3.5.0 |
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32 gff2gbSmallDNA.pl: None |
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33 new_species.pl: None |
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34 etraining: None |
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planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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35 busco: 5.4.4 |