Mercurial > repos > iuc > busco
annotate test-data/genome_results_metaeuk_auto/short_summary @ 19:2a5b8b9936bf draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
author | iuc |
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date | Tue, 14 Nov 2023 13:03:37 +0000 |
parents | bb935709506a |
children | 2babe6d5c561 |
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2a5b8b9936bf
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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1 # BUSCO version is: 5.5.0 |
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2 # The lineage dataset is: eukaryota_odb10 (Creation date: 2020-09-10, number of genomes: 70, number of BUSCOs: 255) |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp5_syjrgy/files/a/5/a/dataset_a5adf25d-f667-41d6-9472-f8661403e128.dat |
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planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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4 # BUSCO was run in mode: euk_genome_met |
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5 # Gene predictor used: metaeuk |
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6 |
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7 ***** Results: ***** |
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8 |
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9 C:0.4%[S:0.4%,D:0.0%],F:0.0%,M:99.6%,n:255 |
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10 1 Complete BUSCOs (C) |
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11 1 Complete and single-copy BUSCOs (S) |
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12 0 Complete and duplicated BUSCOs (D) |
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13 0 Fragmented BUSCOs (F) |
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14 254 Missing BUSCOs (M) |
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15 255 Total BUSCO groups searched |
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16 |
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17 Assembly Statistics: |
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planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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18 1 Number of scaffolds |
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19 1 Number of contigs |
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20 62370 Total length |
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21 0.000% Percent gaps |
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22 62 KB Scaffold N50 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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23 62 KB Contigs N50 |
bb935709506a
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
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24 |
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25 |
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26 Dependencies and versions: |
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27 hmmsearch: 3.1 |
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28 bbtools: 39.01 |
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29 prodigal: 2.6.3 |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
iuc
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30 busco: 5.5.0 |
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31 metaeuk: 6.a5d39d9 |