Mercurial > repos > iuc > busco

annotate test-data/genome_results_metaeuk_auto/short_summary @ 20:ea8146ee148f draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit 9bf18dbcef34a48d3c40150ee953706bececfdd1
author iuc
date Mon, 18 Mar 2024 16:01:49 +0000
parents 2a5b8b9936bf
children 2babe6d5c561
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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1 # BUSCO version is: 5.5.0
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2 # The lineage dataset is: eukaryota_odb10 (Creation date: 2020-09-10, number of genomes: 70, number of BUSCOs: 255)
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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3 # Summarized benchmarking in BUSCO notation for file /tmp/tmp5_syjrgy/files/a/5/a/dataset_a5adf25d-f667-41d6-9472-f8661403e128.dat
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4 # BUSCO was run in mode: euk_genome_met
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5 # Gene predictor used: metaeuk
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7 ***** Results: *****
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9 C:0.4%[S:0.4%,D:0.0%],F:0.0%,M:99.6%,n:255
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10 1 Complete BUSCOs (C)
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11 1 Complete and single-copy BUSCOs (S)
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12 0 Complete and duplicated BUSCOs (D)
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13 0 Fragmented BUSCOs (F)
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14 254 Missing BUSCOs (M)
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15 255 Total BUSCO groups searched
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17 Assembly Statistics:
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18 1 Number of scaffolds
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19 1 Number of contigs
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20 62370 Total length
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21 0.000% Percent gaps
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22 62 KB Scaffold N50
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23 62 KB Contigs N50
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26 Dependencies and versions:
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27 hmmsearch: 3.1
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28 bbtools: 39.01
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29 prodigal: 2.6.3
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2a5b8b9936bf planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/busco/ commit a01d758e10182682225b368696791dd39d6cc820
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30 busco: 5.5.0
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31 metaeuk: 6.a5d39d9