Mercurial > repos > iuc > busco
comparison test-data/genome_results/short_summary @ 16:bb935709506a draft
planemo upload commit f7f94fe1eccafe1e29657bbd79197b4b32e03ffe
| author | iuc |
|---|---|
| date | Thu, 12 Jan 2023 13:28:58 +0000 |
| parents | 2dd755c1c6ff |
| children | 2a5b8b9936bf |
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| 15:41030a6c03b7 | 16:bb935709506a |
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| 1 # BUSCO version is: 5.2.1 | 1 # BUSCO version is: 5.4.4 |
| 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) | 2 # The lineage dataset is: arthropoda_odb10 (Creation date: 2020-09-10, number of genomes: 90, number of BUSCOs: 1013) |
| 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmpctznxi43/files/9/e/c/dataset_9ec37448-e146-4536-b66f-9082e1734ea4.dat | 3 # Summarized benchmarking in BUSCO notation for file /tmp/tmprqvmp912/files/000/dataset_22.dat |
| 4 # BUSCO was run in mode: genome | 4 # BUSCO was run in mode: euk_genome_aug |
| 5 # Gene predictor used: augustus | 5 # Gene predictor used: augustus |
| 6 | 6 |
| 7 ***** Results: ***** | 7 ***** Results: ***** |
| 8 | 8 |
| 9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013 | 9 C:0.1%[S:0.1%,D:0.0%],F:0.0%,M:99.9%,n:1013 |
| 12 0 Complete and duplicated BUSCOs (D) | 12 0 Complete and duplicated BUSCOs (D) |
| 13 0 Fragmented BUSCOs (F) | 13 0 Fragmented BUSCOs (F) |
| 14 1012 Missing BUSCOs (M) | 14 1012 Missing BUSCOs (M) |
| 15 1013 Total BUSCO groups searched | 15 1013 Total BUSCO groups searched |
| 16 | 16 |
| 17 Assembly Statistics: | |
| 18 1 Number of scaffolds | |
| 19 1 Number of contigs | |
| 20 62370 Total length | |
| 21 0.000% Percent gaps | |
| 22 62 KB Scaffold N50 | |
| 23 62 KB Contigs N50 | |
| 24 | |
| 25 | |
| 17 Dependencies and versions: | 26 Dependencies and versions: |
| 18 hmmsearch: 3.1 | 27 hmmsearch: 3.1 |
| 19 makeblastdb: 2.12.0+ | 28 bbtools: 39.01 |
| 20 tblastn: 2.12.0+ | 29 makeblastdb: 2.13.0+ |
| 21 augustus: 3.4.0 | 30 tblastn: 2.13.0+ |
| 31 augustus: 3.5.0 | |
| 22 gff2gbSmallDNA.pl: None | 32 gff2gbSmallDNA.pl: None |
| 23 new_species.pl: None | 33 new_species.pl: None |
| 24 etraining: None | 34 etraining: None |
| 35 busco: 5.4.4 |