Mercurial > repos > iuc > busco
changeset 6:1e62c28ba91d draft
"planemo upload commit 768639889e24aecd31d85d37d6f0bba00ac2a486"
| author | iuc |
|---|---|
| date | Wed, 04 Dec 2019 13:45:35 -0500 |
| parents | 1440ae06552f |
| children | 4048d82f0c88 |
| files | busco.xml |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/busco.xml Mon May 13 09:17:19 2019 -0400 +++ b/busco.xml Wed Dec 04 13:45:35 2019 -0500 @@ -1,4 +1,4 @@ -<tool id="busco" name="Busco" version="@TOOL_VERSION@+galaxy1"> +<tool id="busco" name="Busco" profile="18.01" version="@TOOL_VERSION@+galaxy2"> <description>assess genome assembly and annotation completeness</description> <macros> <token name="@TOOL_VERSION@">3.0.2</token> @@ -7,6 +7,7 @@ <requirement type="package" version="@TOOL_VERSION@">busco</requirement> <requirement type="package" version="3.5.1">r-base</requirement> <requirement type="package" version="3.3.2">augustus</requirement> + <requirement type="package" version="1.29">tar</requirement> </requirements> <command><![CDATA[ export BUSCO_CONFIG_FILE='busco_config.ini' && @@ -17,7 +18,7 @@ #if $adv.aug_prediction.augustus_mode == 'history': ## Using an augustus model from history, we need to unzip it and let augustus find it mkdir -p 'augustus_dir/species/' && - tar -C 'augustus_dir/species/' -xzvf '${adv.aug_prediction.augustus_model}' > /dev/null && + tar -C 'augustus_dir/species/' -xzf '${adv.aug_prediction.augustus_model}' && #end if run_BUSCO.py