Mercurial > repos > iuc > checkm_taxonomy_wf

annotate tool-data/phylum.loc.sample @ 2:19e4e2d98ebb draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 3ae2bd72f789518e95ef65b97e0e5ac90165e113
author iuc
date Mon, 02 Sep 2024 13:51:50 +0000
parents 91230b9141c1
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91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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1 # File generated by format_taxon_list.py script
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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2 # taxon description
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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3 Acidobacteria Acidobacteria (15 genomes, 399 marker genes, 276 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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4 Actinobacteria Actinobacteria (731 genomes, 204 marker genes, 119 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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5 Aquificae Aquificae (18 genomes, 486 marker genes, 369 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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6 Bacteroidetes Bacteroidetes (419 genomes, 286 marker genes, 195 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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7 Chlamydiae Chlamydiae (64 genomes, 455 marker genes, 185 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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8 Chlorobi Chlorobi (12 genomes, 612 marker genes, 333 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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9 Chloroflexi Chloroflexi (20 genomes, 225 marker genes, 149 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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10 Crenarchaeota Crenarchaeota (54 genomes, 217 marker genes, 168 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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11 Cyanobacteria Cyanobacteria (129 genomes, 472 marker genes, 368 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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12 Deferribacteres Deferribacteres (6 genomes, 564 marker genes, 339 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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13 Deinococcus-Thermus Deinococcus-Thermus (40 genomes, 528 marker genes, 359 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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14 Dictyoglomi Dictyoglomi (2 genomes, 1060 marker genes, 103 marker sets)
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15 Euryarchaeota Euryarchaeota (146 genomes, 188 marker genes, 125 marker sets)
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16 Firmicutes Firmicutes (1349 genomes, 172 marker genes, 99 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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17 Fusobacteria Fusobacteria (32 genomes, 289 marker genes, 159 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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18 Ignavibacteriae Ignavibacteriae (2 genomes, 1003 marker genes, 383 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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19 Nitrospirae Nitrospirae (4 genomes, 676 marker genes, 379 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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20 Planctomycetes Planctomycetes (11 genomes, 360 marker genes, 256 marker sets)
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21 Proteobacteria Proteobacteria (2343 genomes, 182 marker genes, 119 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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22 Spirochaetes Spirochaetes (71 genomes, 218 marker genes, 127 marker sets)
91230b9141c1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/checkm commit 2a3b068a98bf0e913dc03e0d5c2182cfd102cf27
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23 Synergistetes Synergistetes (13 genomes, 452 marker genes, 160 marker sets)
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24 Tenericutes Tenericutes (119 genomes, 177 marker genes, 105 marker sets)
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25 Thaumarchaeota Thaumarchaeota (4 genomes, 548 marker genes, 265 marker sets)
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26 Thermodesulfobacteria Thermodesulfobacteria (5 genomes, 813 marker genes, 440 marker sets)
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27 Thermotogae Thermotogae (14 genomes, 460 marker genes, 267 marker sets)
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28 Verrucomicrobia Verrucomicrobia (12 genomes, 346 marker genes, 245 marker sets)