Mercurial > repos > iuc > cnvkit_call

comparison test-data/tumor.cnr @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents 2120d778cfde
children
comparison
equal deleted inserted replaced
1:cc56d01a0b36 2:0a5e2fc51dfb
1 chromosome start end gene depth log2 weight 1 chromosome start end gene depth log2 weight
2 chrM 848 1121 - 5.9011 -0.545691 0.408064 2 chrM 848 1121 - 5.9011 1.10765 0.461544
3 chrM 1394 1667 - 3.78022 0.488494 0.663959 3 chrM 1121 1394 - 1.4359 0.5119 0.42727
4 chrM 1667 1940 - 1.80586 0.0200539 0.951602 4 chrM 1394 1667 - 3.78022 1.00545 0.83803
5 chrM 2212 2485 - 1.65201 -0.234816 0.863481 5 chrM 1667 1940 - 1.80586 -0.141849 0.898961
6 chrM 2485 2758 - 4.0696 0.153636 0.124621 6 chrM 2212 2485 - 1.65201 -0.341112 0.939111
7 chrM 2758 3031 - 0.717949 -1.35597 0.802412 7 chrM 2485 2758 - 4.0696 0.227416 0.0932326
8 chrM 3031 3304 - 1.33333 0.385198 0.698993 8 chrM 2758 3031 - 0.717949 -0.74495 0.631914
9 chrM 3306 3579 - 0.626374 -1.37983 0.9523 9 chrM 3031 3304 - 1.33333 -0.242655 0.920093
10 chrM 3579 3853 - 2.30292 0.471839 0.953456 10 chrM 3306 3579 - 0.626374 -1.60223 0.635989
11 chrM 3853 4126 - 2.74359 0.444955 0.954775 11 chrM 3579 3853 - 2.30292 0.419897 0.823341
12 chrM 4126 4400 - 0.748175 0.465611 0.488348 12 chrM 3853 4126 - 2.74359 0.492218 0.954299
13 chrM 4401 4695 - 0.94898 -0.583114 0.722949 13 chrM 4401 4695 - 0.94898 -0.75838 0.810217
14 chrM 4695 4990 - 5.01695 1.13235 0.235104 14 chrM 4695 4990 - 5.01695 0.833877 0.745894
15 chrM 4990 5284 - 1.73129 0.209867 0.585461 15 chrM 4990 5284 - 1.73129 -0.166905 0.52302
16 chrM 5284 5579 - 5.97966 1.18493 0.334994 16 chrM 5284 5579 - 5.97966 1.47869 0.301566
17 chrM 5586 5655 - 0 -21.0389 0.909906 17 chrM 5586 5655 - 0 -20.2111 0.909096
18 chrM 5656 5729 - 0 -19.8096 0.489546 18 chrM 5656 5729 - 0 -19.9628 0.789733
19 chrM 5760 5891 - 1.79389 0 0.933441 19 chrM 5760 5891 - 1.79389 -0.439065 0.721317
20 chrM 5903 6171 - 2.15299 -0.0283011 0.954219 20 chrM 5903 6171 - 2.15299 0.879609 0.881613
21 chrM 6171 6440 - 2.02974 -0.212606 0.881048 21 chrM 6171 6440 - 2.02974 -0.56855 0.540091
22 chrM 6440 6708 - 1.51493 -0.38297 0.954355 22 chrM 6440 6708 - 1.51493 -0.533208 0.953875
23 chrM 6708 6977 - 2.03717 -0.317296 0.919868 23 chrM 6708 6977 - 2.03717 0.010185 0.924831
24 chrM 6977 7245 - 3.05597 -0.127011 0.931699 24 chrM 6977 7245 - 3.05597 0.140146 0.861631
25 chrM 7245 7514 - 1.24907 0.72831 0.445461 25 chrM 7517 7767 - 1.944 -0.010185 0.932072
26 chrM 7517 7767 - 1.944 0.680162 0.754313 26 chrM 8018 8269 - 1.00797 -0.730833 0.739629
27 chrM 7767 8018 - 2.24701 -0.510836 0.476217 27 chrM 8365 8630 - 1.0717 -0.175653 0.333588
28 chrM 8018 8269 - 1.00797 -0.663743 0.679122 28 chrM 8630 8896 - 2.07895 -0.906325 0.953701
29 chrM 8365 8630 - 1.0717 0.28099 0.736364 29 chrM 8896 9162 - 3.66165 0.578937 0.922022
30 chrM 8630 8896 - 2.07895 -0.154606 0.918337 30 chrM 9162 9427 - 3.60755 0.713289 0.953614
31 chrM 8896 9162 - 3.66165 0.147562 0.952129 31 chrM 9427 9693 - 0.808271 -0.874973 0.24358
32 chrM 9162 9427 - 3.60755 0.937798 0.763689 32 chrM 9693 9959 - 2.07143 0.093785 0.870609
33 chrM 9693 9959 - 2.07143 0.459741 0.807601 33 chrM 10490 10756 - 1.82331 0.051865 0.901124
34 chrM 9959 10224 - 0.00377358 -8.75948 0.810371 34 chrM 10756 11022 - 1.12406 -0.367165 0.23713
35 chrM 10224 10490 - 1.44361 0.509209 0.934515 35 chrM 11022 11287 - 4.27925 0.646415 0.94264
36 chrM 10490 10756 - 1.82331 0.0655732 0.839154 36 chrM 11287 11553 - 2.93609 0.0993253 0.941632
37 chrM 10756 11022 - 1.12406 0.238204 0.822297 37 chrM 11553 11819 - 1.06015 -0.671504 0.923937
38 chrM 11022 11287 - 4.27925 1.20043 0.953885 38 chrM 11819 12084 - 2.40377 -0.123249 0.829158
39 chrM 11287 11553 - 2.93609 0.224804 0.945234 39 chrM 12084 12350 - 0.736842 -1.27337 0.953701
40 chrM 11553 11819 - 1.06015 -1.50066 0.954184 40 chrM 12350 12616 - 0.736842 -1.07369 0.953701
41 chrM 11819 12084 - 2.40377 0.0920864 0.791533 41 chrM 12616 12882 - 2.48872 -0.24473 0.918407
42 chrM 12084 12350 - 0.736842 -1.15941 0.633433 42 chrM 12882 13147 - 4.50943 0.330991 0.612262
43 chrM 12350 12616 - 0.736842 -1.25242 0.954184 43 chrM 13147 13413 - 1.47368 0.0980097 0.895383
44 chrM 12616 12882 - 2.48872 -0.187246 0.898846 44 chrM 13413 13679 - 2.95865 0.764085 0.898039
45 chrM 12882 13147 - 4.50943 0.419127 0.915456 45 chrM 13679 13944 - 1.64906 0.200821 0.200719
46 chrM 13147 13413 - 1.47368 -0.730007 0.952782 46 chrM 13944 14210 - 0.890977 -1.20825 0.935464
47 chrM 13413 13679 - 2.95865 -0.0213761 0.95418 47 chrM 14210 14476 - 2.21053 0.220457 0.911385
48 chrM 13944 14210 - 0.890977 -0.337011 0.755369 48 chrM 14987 15228 - 2.48133 0.0611491 0.887423
49 chrM 14210 14476 - 2.21053 -0.0427224 0.83652 49 chrM 15228 15470 - 1.11157 -0.517988 0.95146
50 chrM 14746 14987 - 8.14523 0.722701 0.582259 50 chrM 15470 15711 - 3.9751 0.858538 0.951359
51 chrM 14987 15228 - 2.48133 -0.105067 0.78567 51 chrM 15711 15953 - 0.809917 -0.698856 0.917254
52 chrM 15228 15470 - 1.11157 -0.96567 0.951837 52 chrM 15955 16023 - 0 -20.8746 0.88741
53 chrM 15470 15711 - 3.9751 0.576278 0.951583
54 chrM 15711 15953 - 0.809917 -1.38778 0.949491
55 chrM 15955 16023 - 0 -21.1972 0.909384