Mercurial > repos > iuc > cnvkit_call

diff test-data/tumor.cnr @ 2:0a5e2fc51dfb draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/cnvkit commit e927b17a345b18c1b51dc1b112db5129278dcd22
author iuc
date Fri, 29 Sep 2023 15:40:43 +0000
parents 2120d778cfde
children
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line diff
--- a/test-data/tumor.cnr	Sun May 14 21:23:36 2023 +0000
+++ b/test-data/tumor.cnr	Fri Sep 29 15:40:43 2023 +0000
@@ -1,55 +1,52 @@
 chromosome	start	end	gene	depth	log2	weight
-chrM	848	1121	-	5.9011	-0.545691	0.408064
-chrM	1394	1667	-	3.78022	0.488494	0.663959
-chrM	1667	1940	-	1.80586	0.0200539	0.951602
-chrM	2212	2485	-	1.65201	-0.234816	0.863481
-chrM	2485	2758	-	4.0696	0.153636	0.124621
-chrM	2758	3031	-	0.717949	-1.35597	0.802412
-chrM	3031	3304	-	1.33333	0.385198	0.698993
-chrM	3306	3579	-	0.626374	-1.37983	0.9523
-chrM	3579	3853	-	2.30292	0.471839	0.953456
-chrM	3853	4126	-	2.74359	0.444955	0.954775
-chrM	4126	4400	-	0.748175	0.465611	0.488348
-chrM	4401	4695	-	0.94898	-0.583114	0.722949
-chrM	4695	4990	-	5.01695	1.13235	0.235104
-chrM	4990	5284	-	1.73129	0.209867	0.585461
-chrM	5284	5579	-	5.97966	1.18493	0.334994
-chrM	5586	5655	-	0	-21.0389	0.909906
-chrM	5656	5729	-	0	-19.8096	0.489546
-chrM	5760	5891	-	1.79389	0	0.933441
-chrM	5903	6171	-	2.15299	-0.0283011	0.954219
-chrM	6171	6440	-	2.02974	-0.212606	0.881048
-chrM	6440	6708	-	1.51493	-0.38297	0.954355
-chrM	6708	6977	-	2.03717	-0.317296	0.919868
-chrM	6977	7245	-	3.05597	-0.127011	0.931699
-chrM	7245	7514	-	1.24907	0.72831	0.445461
-chrM	7517	7767	-	1.944	0.680162	0.754313
-chrM	7767	8018	-	2.24701	-0.510836	0.476217
-chrM	8018	8269	-	1.00797	-0.663743	0.679122
-chrM	8365	8630	-	1.0717	0.28099	0.736364
-chrM	8630	8896	-	2.07895	-0.154606	0.918337
-chrM	8896	9162	-	3.66165	0.147562	0.952129
-chrM	9162	9427	-	3.60755	0.937798	0.763689
-chrM	9693	9959	-	2.07143	0.459741	0.807601
-chrM	9959	10224	-	0.00377358	-8.75948	0.810371
-chrM	10224	10490	-	1.44361	0.509209	0.934515
-chrM	10490	10756	-	1.82331	0.0655732	0.839154
-chrM	10756	11022	-	1.12406	0.238204	0.822297
-chrM	11022	11287	-	4.27925	1.20043	0.953885
-chrM	11287	11553	-	2.93609	0.224804	0.945234
-chrM	11553	11819	-	1.06015	-1.50066	0.954184
-chrM	11819	12084	-	2.40377	0.0920864	0.791533
-chrM	12084	12350	-	0.736842	-1.15941	0.633433
-chrM	12350	12616	-	0.736842	-1.25242	0.954184
-chrM	12616	12882	-	2.48872	-0.187246	0.898846
-chrM	12882	13147	-	4.50943	0.419127	0.915456
-chrM	13147	13413	-	1.47368	-0.730007	0.952782
-chrM	13413	13679	-	2.95865	-0.0213761	0.95418
-chrM	13944	14210	-	0.890977	-0.337011	0.755369
-chrM	14210	14476	-	2.21053	-0.0427224	0.83652
-chrM	14746	14987	-	8.14523	0.722701	0.582259
-chrM	14987	15228	-	2.48133	-0.105067	0.78567
-chrM	15228	15470	-	1.11157	-0.96567	0.951837
-chrM	15470	15711	-	3.9751	0.576278	0.951583
-chrM	15711	15953	-	0.809917	-1.38778	0.949491
-chrM	15955	16023	-	0	-21.1972	0.909384
+chrM	848	1121	-	5.9011	1.10765	0.461544
+chrM	1121	1394	-	1.4359	0.5119	0.42727
+chrM	1394	1667	-	3.78022	1.00545	0.83803
+chrM	1667	1940	-	1.80586	-0.141849	0.898961
+chrM	2212	2485	-	1.65201	-0.341112	0.939111
+chrM	2485	2758	-	4.0696	0.227416	0.0932326
+chrM	2758	3031	-	0.717949	-0.74495	0.631914
+chrM	3031	3304	-	1.33333	-0.242655	0.920093
+chrM	3306	3579	-	0.626374	-1.60223	0.635989
+chrM	3579	3853	-	2.30292	0.419897	0.823341
+chrM	3853	4126	-	2.74359	0.492218	0.954299
+chrM	4401	4695	-	0.94898	-0.75838	0.810217
+chrM	4695	4990	-	5.01695	0.833877	0.745894
+chrM	4990	5284	-	1.73129	-0.166905	0.52302
+chrM	5284	5579	-	5.97966	1.47869	0.301566
+chrM	5586	5655	-	0	-20.2111	0.909096
+chrM	5656	5729	-	0	-19.9628	0.789733
+chrM	5760	5891	-	1.79389	-0.439065	0.721317
+chrM	5903	6171	-	2.15299	0.879609	0.881613
+chrM	6171	6440	-	2.02974	-0.56855	0.540091
+chrM	6440	6708	-	1.51493	-0.533208	0.953875
+chrM	6708	6977	-	2.03717	0.010185	0.924831
+chrM	6977	7245	-	3.05597	0.140146	0.861631
+chrM	7517	7767	-	1.944	-0.010185	0.932072
+chrM	8018	8269	-	1.00797	-0.730833	0.739629
+chrM	8365	8630	-	1.0717	-0.175653	0.333588
+chrM	8630	8896	-	2.07895	-0.906325	0.953701
+chrM	8896	9162	-	3.66165	0.578937	0.922022
+chrM	9162	9427	-	3.60755	0.713289	0.953614
+chrM	9427	9693	-	0.808271	-0.874973	0.24358
+chrM	9693	9959	-	2.07143	0.093785	0.870609
+chrM	10490	10756	-	1.82331	0.051865	0.901124
+chrM	10756	11022	-	1.12406	-0.367165	0.23713
+chrM	11022	11287	-	4.27925	0.646415	0.94264
+chrM	11287	11553	-	2.93609	0.0993253	0.941632
+chrM	11553	11819	-	1.06015	-0.671504	0.923937
+chrM	11819	12084	-	2.40377	-0.123249	0.829158
+chrM	12084	12350	-	0.736842	-1.27337	0.953701
+chrM	12350	12616	-	0.736842	-1.07369	0.953701
+chrM	12616	12882	-	2.48872	-0.24473	0.918407
+chrM	12882	13147	-	4.50943	0.330991	0.612262
+chrM	13147	13413	-	1.47368	0.0980097	0.895383
+chrM	13413	13679	-	2.95865	0.764085	0.898039
+chrM	13679	13944	-	1.64906	0.200821	0.200719
+chrM	13944	14210	-	0.890977	-1.20825	0.935464
+chrM	14210	14476	-	2.21053	0.220457	0.911385
+chrM	14987	15228	-	2.48133	0.0611491	0.887423
+chrM	15228	15470	-	1.11157	-0.517988	0.95146
+chrM	15470	15711	-	3.9751	0.858538	0.951359
+chrM	15711	15953	-	0.809917	-0.698856	0.917254
+chrM	15955	16023	-	0	-20.8746	0.88741