Mercurial > repos > iuc > colabfold_msa
annotate macros.xml @ 1:6fbd935575ce draft default tip
planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
author | iuc |
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date | Wed, 21 Aug 2024 07:40:01 +0000 |
parents | 941f89a0c552 |
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rev | line source |
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941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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1 <macros> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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2 <token name="@VERSION@">1.5.5</token> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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3 <token name="@CUDA_VERSION@">12.2.2</token> |
1
6fbd935575ce
planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
0
diff
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4 <token name="@VERSION_SUFFIX@">1</token> |
0
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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5 <xml name="requirements"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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6 <requirements> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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7 <container type="docker">ghcr.io/sokrypton/colabfold:@VERSION@-cuda@CUDA_VERSION@</container> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
8 </requirements> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
9 </xml> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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10 <xml name="biotools"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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11 <xrefs> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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12 <xref type="bio.tools">Colabfold</xref> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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13 </xrefs> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
14 </xml> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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15 <xml name="citations"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
16 <citations> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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17 <citation type="doi">10.1038/s41592-022-01488-1</citation> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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18 </citations> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
19 </xml> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
20 <xml name="db_selector"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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21 <conditional name="select_db"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
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22 <param name="use_db" type="select" label="Manually set database?"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
23 <option value="yes">Yes</option> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
24 <option value="no">No</option> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
25 </param> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
26 <when value="no"></when> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
27 <when value="yes"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
28 <param name="msa_mode" label="MSA mode" type="select"> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
29 <option value="mmseqs2_uniref_env">mmseqs2_uniref_env</option> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
30 <option value="mmseqs2_uniref">mmseqs2_uniref</option> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
31 <option value="single_sequence">Use single sequence input</option> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
32 <!-- <option value="custom">custom</option> --> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
33 </param> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
34 </when> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
35 </conditional> |
941f89a0c552
planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
iuc
parents:
diff
changeset
|
36 </xml> |
1
6fbd935575ce
planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
iuc
parents:
0
diff
changeset
|
37 </macros> |