annotate macros.xml @ 1:6fbd935575ce draft default tip

planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
author iuc
date Wed, 21 Aug 2024 07:40:01 +0000
parents 941f89a0c552
children
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941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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1 <macros>
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2 <token name="@VERSION@">1.5.5</token>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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3 <token name="@CUDA_VERSION@">12.2.2</token>
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6fbd935575ce planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
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4 <token name="@VERSION_SUFFIX@">1</token>
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941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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5 <xml name="requirements">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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6 <requirements>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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7 <container type="docker">ghcr.io/sokrypton/colabfold:@VERSION@-cuda@CUDA_VERSION@</container>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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8 </requirements>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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9 </xml>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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10 <xml name="biotools">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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11 <xrefs>
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12 <xref type="bio.tools">Colabfold</xref>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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13 </xrefs>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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14 </xml>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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15 <xml name="citations">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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16 <citations>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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17 <citation type="doi">10.1038/s41592-022-01488-1</citation>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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18 </citations>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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19 </xml>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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20 <xml name="db_selector">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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21 <conditional name="select_db">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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22 <param name="use_db" type="select" label="Manually set database?">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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23 <option value="yes">Yes</option>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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24 <option value="no">No</option>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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25 </param>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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26 <when value="no"></when>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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27 <when value="yes">
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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28 <param name="msa_mode" label="MSA mode" type="select">
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29 <option value="mmseqs2_uniref_env">mmseqs2_uniref_env</option>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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30 <option value="mmseqs2_uniref">mmseqs2_uniref</option>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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31 <option value="single_sequence">Use single sequence input</option>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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32 <!-- <option value="custom">custom</option> -->
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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33 </param>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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34 </when>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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35 </conditional>
941f89a0c552 planemo upload for repository https://github.com/sokrypton/ColabFold commit a95dcf30e8d801e477726fb997cbc55261731879
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36 </xml>
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6fbd935575ce planemo upload for repository https://github.com/sokrypton/ColabFold commit b01085b7137b002268e0a8e4d75a5e03326638bb
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37 </macros>