Mercurial > repos > iuc > data_manager_build_staramr

annotate test-data/staramr_database.loc.test @ 0:3658cf4b6fd2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
author iuc
date Thu, 16 Jan 2025 08:28:55 +0000
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3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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1 #This is a tab separated file describing the location of StarAMR databases
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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2 #used for the StarAMR tool
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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3 #
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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4 #file has this format (white space characters are TAB characters)
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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5 #
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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6 #The columns are:
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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7 #value name path resfinder_commit pointfinder_commit plasmidfinder_commit
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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8 #
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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9 #For example
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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10 #staramr_downloaded_20241004_resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 ResFinder: tag 4.6.0, commit d1e607b, 2024-08-06 - PointFinder: tag 4.1.1, commit 694919f, 2024-08-08 - PlasmidFinder: commit 3e77502, 2024-03-07 (downloaded 20241004) /path/to/data d1e607b 694919f 3e77502
3658cf4b6fd2 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_build_staramr commit 45daaecba3332d984a900727bf348ffb07a07154
iuc
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11 staramr_downloaded_13012025_resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 starAMR databases with ResFinder: 2.4.0_d1e607b_2024-08-06, PointFinder: 4.1.1_694919f_2024-08-08, PlasmidFinder: 3e77502_2024-03-07 /tmp/tmpc6qeamum/galaxy-dev/tool-data/staramr/resfinder_d1e607b_pointfinder_694919f_plasmidfinder_3e77502 d1e607b 694919f 3e77502