Mercurial > repos > iuc > data_manager_dada2

diff test-data/dada2_species.loc @ 8:0181efacb40a draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
author iuc
date Sat, 22 Nov 2025 20:07:44 +0000
parents f57c13f5878b
children
line wrap: on
line diff
--- a/test-data/dada2_species.loc	Tue May 21 07:35:56 2024 +0000
+++ b/test-data/dada2_species.loc	Sat Nov 22 20:07:44 2025 +0000
@@ -7,3 +7,62 @@
 # Datasets can be retrieved from http://busco.ezlab.org/frame_wget.html
 #
 # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html
+silva_138	Silva version 138	/tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species
+silva_138	Silva version 138	/tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138	Silva version 138	/home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy
+silva_132	Silva version 132	/home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy
+rdp_16	RDP trainset 16	/home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy
+silva_138	Silva version 138	/tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy
+silva_138.2	Silva version 138.2	/tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2.taxonomy
+silva_138	Silva version 138	/tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy
+silva_132	Silva version 132	/tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy
+rdp_16	RDP trainset 16	/tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy
+silva_138	Silva version 138	/tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138	Silva version 138	/tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138	Silva version 138	/tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138.2	Silva version 138.2	/tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138	Silva version 138	/tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138.2	Silva version 138.2	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138.2_fungi_18S	Silva version 138.2 for Fungi 18S 	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
+silva_138.2_fungi_26S	Silva version 138.2 for Fungi 26S 	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
+silva_138	Silva version 138	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.species
+silva_138.2	Silva version 138.2	/tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138.2_fungi_18S	Silva version 138.2 for Fungi 18S 	/tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
+silva_138.2_fungi_26S	Silva version 138.2 for Fungi 26S 	/tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
+silva_138	Silva version 138	/tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.species
+silva_138.2	Silva version 138.2	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138.2_fungi_18S	Silva version 138.2 for Fungi 18S 	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
+silva_138.2_fungi_26S	Silva version 138.2 for Fungi 26S 	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
+silva_138	Silva version 138	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.species
+gtdb_202	GTDB Version 202	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202.species
+gtdb_2018_11	GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018)	/tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.species
+silva_138.2	Silva version 138.2	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138.2_fungi_18S	Silva version 138.2 for Fungi 18S	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
+silva_138.2_fungi_26S	Silva version 138.2 for Fungi 26S	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
+silva_138	Silva version 138	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.species
+gtdb_202	GTDB Version 202	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202.species
+gtdb_2018_11	GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018)	/tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.species
+silva_138.2	Silva version 138.2	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2.species
+silva_138.2_fungi_18S	Silva version 138.2 for Fungi 18S	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
+silva_138.2_fungi_26S	Silva version 138.2 for Fungi 26S	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
+silva_138	Silva version 138	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.species
+silva_132	Silva version 132	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.species
+rdp_16	RDP trainset 16	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.species
+gtdb_202	GTDB Version 202	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202.species
+gtdb_2018_11	GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018)	/tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.species