Mercurial > repos > iuc > data_manager_dada2
view test-data/dada2_species.loc @ 8:0181efacb40a draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
| author | iuc |
|---|---|
| date | Sat, 22 Nov 2025 20:07:44 +0000 |
| parents | f57c13f5878b |
| children |
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# This is a sample file distributed with Galaxy that is used to define a # list of dada2 reference data sets for species assignment, using three # tab separated columns: # # <unique_build_id> <display_name> <fasta_file_path> # # Datasets can be retrieved from http://busco.ezlab.org/frame_wget.html # # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.species silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy silva_138 Silva version 138 /tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy silva_138.2 Silva version 138.2 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2.taxonomy silva_138 Silva version 138 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy silva_132 Silva version 132 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy rdp_16 RDP trainset 16 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy silva_138 Silva version 138 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.species silva_138 Silva version 138 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.species silva_138 Silva version 138 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.species silva_138.2 Silva version 138.2 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138 Silva version 138 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.species silva_138.2 Silva version 138.2 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species silva_138 Silva version 138 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.species silva_138.2 Silva version 138.2 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species silva_138 Silva version 138 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.species silva_138.2 Silva version 138.2 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species silva_138 Silva version 138 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.species gtdb_202 GTDB Version 202 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202.species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.species silva_138.2 Silva version 138.2 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species silva_138 Silva version 138 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.species gtdb_202 GTDB Version 202 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202.species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.species silva_138.2 Silva version 138.2 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2.species silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species silva_138 Silva version 138 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.species silva_132 Silva version 132 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.species rdp_16 RDP trainset 16 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.species gtdb_202 GTDB Version 202 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202.species gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.species