Mercurial > repos > iuc > data_manager_dada2

annotate test-data/dada2_species.loc @ 8:0181efacb40a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
author iuc
date Sat, 22 Nov 2025 20:07:44 +0000
parents f57c13f5878b
children
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f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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1 # This is a sample file distributed with Galaxy that is used to define a
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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2 # list of dada2 reference data sets for species assignment, using three
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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3 # tab separated columns:
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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4 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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5 # <unique_build_id> <display_name> <fasta_file_path>
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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6 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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7 # Datasets can be retrieved from http://busco.ezlab.org/frame_wget.html
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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8 #
f57c13f5878b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_dada2 commit f8b6b6e72914ad6bcca8423dfa03f59bde80992e"
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9 # Datasets can be retrieved from https://benjjneb.github.io/dada2/training.html
8
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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10 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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11 silva_138 Silva version 138 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_138.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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12 silva_132 Silva version 132 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/silva_132.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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13 rdp_16 RDP trainset 16 /tmp/tmpwu1f80mk/galaxy-dev/tool-data/dada2/rdp_16.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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14 silva_138 Silva version 138 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_138.taxonomy
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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15 silva_132 Silva version 132 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/silva_132.taxonomy
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16 rdp_16 RDP trainset 16 /home/berntm/projects/galaxyproject/galaxy/tool-data/dada2/rdp_16.taxonomy
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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17 silva_138 Silva version 138 /tmp/tmp7bm731ex/galaxy-dev/tool-data/dada2/silva_138.taxonomy
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18 silva_138.2 Silva version 138.2 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.2.taxonomy
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19 silva_138 Silva version 138 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_138.taxonomy
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20 silva_132 Silva version 132 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/silva_132.taxonomy
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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21 rdp_16 RDP trainset 16 /tmp/tmpr1gsd54b/galaxy-dev/tool-data/dada2/rdp_16.taxonomy
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22 silva_138 Silva version 138 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_138.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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23 silva_132 Silva version 132 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/silva_132.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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24 rdp_16 RDP trainset 16 /tmp/tmpoi2hra5r/galaxy-dev/tool-data/dada2/rdp_16.species
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25 silva_138 Silva version 138 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_138.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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26 silva_132 Silva version 132 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/silva_132.species
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27 rdp_16 RDP trainset 16 /tmp/tmp47q48feg/galaxy-dev/tool-data/dada2/rdp_16.species
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28 silva_138 Silva version 138 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_138.species
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29 silva_132 Silva version 132 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/silva_132.species
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30 rdp_16 RDP trainset 16 /tmp/tmp91nggwrv/galaxy-dev/tool-data/dada2/rdp_16.species
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31 silva_138.2 Silva version 138.2 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.2.species
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32 silva_138 Silva version 138 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_138.species
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33 silva_132 Silva version 132 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/silva_132.species
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34 rdp_16 RDP trainset 16 /tmp/tmpup9xbr2j/galaxy-dev/tool-data/dada2/rdp_16.species
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35 silva_138.2 Silva version 138.2 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2.species
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36 silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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37 silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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38 silva_138 Silva version 138 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_138.species
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39 silva_132 Silva version 132 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/silva_132.species
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40 rdp_16 RDP trainset 16 /tmp/tmpxu6le44b/galaxy-dev/tool-data/dada2/rdp_16.species
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41 silva_138.2 Silva version 138.2 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2.species
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42 silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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43 silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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44 silva_138 Silva version 138 /tmp/tmp6zg8nm9p/galaxy-dev/tool-data/dada2/silva_138.species
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45 silva_138.2 Silva version 138.2 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2.species
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46 silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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47 silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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48 silva_138 Silva version 138 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_138.species
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49 silva_132 Silva version 132 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/silva_132.species
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50 rdp_16 RDP trainset 16 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/rdp_16.species
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51 gtdb_202 GTDB Version 202 /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_202.species
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52 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpqhx678py/galaxy-dev/tool-data/dada2/gtdb_2018_11.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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53 silva_138.2 Silva version 138.2 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2.species
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54 silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
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55 silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
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56 silva_138 Silva version 138 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_138.species
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57 silva_132 Silva version 132 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/silva_132.species
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58 rdp_16 RDP trainset 16 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/rdp_16.species
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59 gtdb_202 GTDB Version 202 /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_202.species
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60 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmp69cbfw_6/galaxy-dev/tool-data/dada2/gtdb_2018_11.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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61 silva_138.2 Silva version 138.2 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2.species
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62 silva_138.2_fungi_18S Silva version 138.2 for Fungi 18S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_18S.species
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63 silva_138.2_fungi_26S Silva version 138.2 for Fungi 26S /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.2_fungi_26S.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
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64 silva_138 Silva version 138 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_138.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
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65 silva_132 Silva version 132 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/silva_132.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
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66 rdp_16 RDP trainset 16 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/rdp_16.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
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67 gtdb_202 GTDB Version 202 /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_202.species
0181efacb40a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/data_managers/data_manager_dada2 commit 5f2ed0407e3adaafc6070fc0594a4685ade094db
iuc
parents: 0
diff changeset
68 gtdb_2018_11 GTDB: Genome Taxonomy Database (Bacteria & Archaea) (11/2018) /tmp/tmpi0_027xn/galaxy-dev/tool-data/dada2/gtdb_2018_11.species