Mercurial > repos > iuc > data_manager_gemini_database_downloader
annotate data_manager/data_manager_gemini_download.xml @ 4:fe5a9a7d95b0 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
author | iuc |
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date | Fri, 14 Dec 2018 12:40:15 -0500 |
parents | 172815da3d41 |
children | f57426daa04d |
rev | line source |
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fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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changeset
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1 <tool id="data_manager_gemini_download" name="GEMINI Download" version="@VERSION@.1" tool_type="manage_data"> |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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2 <description>the annotation files required by the GEMINI suite of tools</description> |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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3 <macros> |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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changeset
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4 <token name="@VERSION@">0.18.1</token> |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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3
diff
changeset
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5 <token name="@DB_VERSION@">181</token> |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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changeset
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6 </macros> |
0 | 7 <requirements> |
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fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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changeset
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8 <requirement type="package" version="@VERSION@">gemini</requirement> |
0 | 9 </requirements> |
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172815da3d41
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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changeset
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10 <command detect_errors="exit_code"> |
172815da3d41
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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11 python '$__tool_directory__/data_manager_gemini_download.py' '$out_file' |
0 | 12 </command> |
13 <inputs> | |
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345412d58d75
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
iuc
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14 <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True" |
0 | 15 label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/> |
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345412d58d75
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_database_downloader commit 4bbfca6f0e9cae9a8f263aad4eab7304c96358c4
iuc
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16 <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True" |
0 | 17 label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/> |
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fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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changeset
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18 <param name="gemini_db_version" type="hidden" value="@DB_VERSION@"/> |
0 | 19 </inputs> |
20 <outputs> | |
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172815da3d41
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 8652f36a3a3838dca989426961561e81432acf4f
iuc
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21 <data name="out_file" format="data_manager_json" label="${tool.name}"/> |
0 | 22 </outputs> |
23 <tests> | |
24 </tests> | |
25 <help> | |
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fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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26 This tool downloads the GEMINI annotation files and makes them available to |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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27 corresponding versions of the GEMINI suite of tools. Downloading the (very large) CADD_ scores and GERP_ annotation files is optional. |
0 | 28 |
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fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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29 Please visit http://gemini.readthedocs.io for details about GEMINI. |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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30 |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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31 .. _GERP: http://mendel.stanford.edu/SidowLab/downloads/gerp/index.html |
fe5a9a7d95b0
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_gemini_database_downloader commit 283362494058ed64143b1f27afb447b8a1cb4313
iuc
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3
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32 .. _CADD: https://cadd.gs.washington.edu/ |
0 | 33 </help> |
34 <citations> | |
35 <citation type="doi">10.1371/journal.pcbi.1003153</citation> | |
36 </citations> | |
37 </tool> | |
38 |