Mercurial > repos > iuc > data_manager_omamer
comparison data_manager/omamer.xml @ 0:e1502e4f8725 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit 8ff9ada22d22cb94ddfff51bcdd3ab7d30104f1a
author | iuc |
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date | Wed, 21 Feb 2024 19:26:53 +0000 |
parents | |
children | 57db282ca204 |
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-1:000000000000 | 0:e1502e4f8725 |
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1 <tool id="data_manager_omamer" name="OMAmer data manager" version="2.0.2" tool_type="manage_data" profile="20.01"> | |
2 <macros> | |
3 <import>macros.xml</import> | |
4 </macros> | |
5 <version_command></version_command> | |
6 <command detect_errors="exit_code"><![CDATA[ | |
7 python '$__tool_directory__/omamer.py' | |
8 --name '$name' | |
9 --json '$output_file' | |
10 ]]></command> | |
11 <inputs> | |
12 <param name="output_dir" type="text" label="Output Directory" value=""/> | |
13 <param name="name" type="select" label="Database"> | |
14 <option value="Primates">Primates</option> | |
15 <option value="Viridiplantae">Viridiplantae</option> | |
16 <option value="Metazoa">Metazoa</option> | |
17 <option value="LUCA">LUCA</option> | |
18 </param> | |
19 </inputs> | |
20 | |
21 <outputs> | |
22 <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/> | |
23 </outputs> | |
24 | |
25 <tests> | |
26 <test> | |
27 <param name="output_dir" value="test_galaxy"/> | |
28 <param name="name" value="Primates"/> | |
29 <output name="output_file"> | |
30 <assert_contents> | |
31 <has_text text="Primates-v2.0"/> | |
32 <has_text text="database_omamer"/> | |
33 </assert_contents> | |
34 </output> | |
35 </test> | |
36 </tests> | |
37 | |
38 <help><![CDATA[ | |
39 This data manager retrieves data from various pre-built databases. | |
40 | |
41 .. _omamer: https://github.com/DessimozLab/omamer | |
42 ]]></help> | |
43 <citations> | |
44 <citation type="doi">10.1093/bioinformatics/btab219</citation> | |
45 </citations> | |
46 </tool> |