Mercurial > repos > iuc > data_manager_omamer
diff data_manager/omamer.xml @ 0:e1502e4f8725 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit 8ff9ada22d22cb94ddfff51bcdd3ab7d30104f1a
author | iuc |
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date | Wed, 21 Feb 2024 19:26:53 +0000 |
parents | |
children | 57db282ca204 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/data_manager/omamer.xml Wed Feb 21 19:26:53 2024 +0000 @@ -0,0 +1,46 @@ +<tool id="data_manager_omamer" name="OMAmer data manager" version="2.0.2" tool_type="manage_data" profile="20.01"> + <macros> + <import>macros.xml</import> + </macros> + <version_command></version_command> + <command detect_errors="exit_code"><![CDATA[ + python '$__tool_directory__/omamer.py' + --name '$name' + --json '$output_file' + ]]></command> + <inputs> + <param name="output_dir" type="text" label="Output Directory" value=""/> + <param name="name" type="select" label="Database"> + <option value="Primates">Primates</option> + <option value="Viridiplantae">Viridiplantae</option> + <option value="Metazoa">Metazoa</option> + <option value="LUCA">LUCA</option> + </param> + </inputs> + + <outputs> + <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/> + </outputs> + + <tests> + <test> + <param name="output_dir" value="test_galaxy"/> + <param name="name" value="Primates"/> + <output name="output_file"> + <assert_contents> + <has_text text="Primates-v2.0"/> + <has_text text="database_omamer"/> + </assert_contents> + </output> + </test> + </tests> + + <help><![CDATA[ + This data manager retrieves data from various pre-built databases. + + .. _omamer: https://github.com/DessimozLab/omamer + ]]></help> + <citations> + <citation type="doi">10.1093/bioinformatics/btab219</citation> + </citations> +</tool> \ No newline at end of file