diff data_manager/omamer.xml @ 1:57db282ca204 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_omamer commit 67067cd7917545904b3a9980948abdd19f0576bd

--- a/data_manager/omamer.xml	Wed Feb 21 19:26:53 2024 +0000
+++ b/data_manager/omamer.xml	Thu Mar 07 14:28:42 2024 +0000
@@ -1,4 +1,4 @@
-<tool id="data_manager_omamer" name="OMAmer data manager" version="2.0.2" tool_type="manage_data" profile="20.01">
+<tool id="data_manager_omamer" name="OMAmer data manager" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="manage_data" profile="20.01">
     <macros>
         <import>macros.xml</import>
     </macros>
@@ -7,6 +7,7 @@
         python '$__tool_directory__/omamer.py'
         --name '$name'
         --json '$output_file'
+        --version '@TOOL_VERSION@'
     ]]></command>
     <inputs>
         <param name="output_dir" type="text" label="Output Directory" value=""/>
@@ -17,7 +18,7 @@
             <option value="LUCA">LUCA</option>
         </param>
     </inputs>
-    
+
     <outputs>
         <data name="output_file" format="data_manager_json" label="OMAmer data manager: JSON"/>
     </outputs>
@@ -26,15 +27,10 @@
         <test>
             <param name="output_dir" value="test_galaxy"/>
             <param name="name" value="Primates"/>
-            <output name="output_file">
-                <assert_contents>
-                    <has_text text="Primates-v2.0"/>
-                    <has_text text="database_omamer"/>
-                </assert_contents>
-            </output>
+            <output name="output_file" file="out.json"/>
         </test>
     </tests>
-    
+
     <help><![CDATA[
         This data manager retrieves data from various pre-built databases.
 
@@ -43,4 +39,4 @@
     <citations>
         <citation type="doi">10.1093/bioinformatics/btab219</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>