Mercurial > repos > iuc > data_manager_salmon_index_builder
changeset 1:6b0f2bdcc1b7 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_salmon_index_builder commit dcd9b028532258b62cfe15b60d5bef05cac9ed69"
| author | iuc |
|---|---|
| date | Thu, 19 Sep 2019 17:19:02 -0400 |
| parents | 7d4fd734b078 |
| children | 57274fe5e01a |
| files | data_manager/salmon_index_builder.xml test-data/salmon_phiX174.data_manager_json |
| diffstat | 2 files changed, 7 insertions(+), 4 deletions(-) [+] |
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--- a/data_manager/salmon_index_builder.xml Wed Jul 24 07:17:00 2019 -0400 +++ b/data_manager/salmon_index_builder.xml Thu Sep 19 17:19:02 2019 -0400 @@ -1,11 +1,11 @@ <tool id="salmon_index_builder_data_manager" name="Salmon" tool_type="manage_data" version="0.11.3" profile_version="19.01"> <description>index builder</description> <requirements> - <requirement type="package" version="0.11.3">salmon</requirement> + <requirement type="package" version="0.14.1">salmon</requirement> <requirement type="package" version="3.7">python</requirement> </requirements> <macros> - <token name="@IDX_VERSION@">q5</token> + <token name="@IDX_VERSION@">q6</token> </macros> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/salmon_index_builder.py' --output '${out_file}' @@ -34,7 +34,11 @@ <param name="all_fasta_source" value="phiX174"/> <param name="sequence_name" value="sequence_name"/> <param name="sequence_id" value="sequence_id"/> - <output name="out_file" file="salmon_phiX174.data_manager_json"/> + <output name="out_file"> + <assert_contents> + <has_line line='{"data_tables": {"salmon_indexes_versioned": [{"dbkey": "phiX174", "name": "sequence_name", "path": "sequence_id", "value": "sequence_id", "version": "q6"}]}}' /> + </assert_contents> + </output> </test> </tests> <help>
--- a/test-data/salmon_phiX174.data_manager_json Wed Jul 24 07:17:00 2019 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,1 +0,0 @@ -{"data_tables": {"salmon_indexes_versioned": [{"dbkey": "phiX174", "name": "sequence_name", "path": "sequence_id", "value": "sequence_id", "version": "q5"}]}} \ No newline at end of file