annotate data_manager_conf.xml @ 11:d63c1442407f draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
author iuc
date Sun, 16 Apr 2023 08:31:33 +0000
parents 6c6c6df09e64
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e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
iuc
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1 <?xml version="1.0"?>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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2 <data_managers>
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d63c1442407f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
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3 <data_manager tool_file="data_manager/rna_star_index_builder.xml" id="rna_star_index_builder">
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6c6c6df09e64 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit a8e319862d723654c372a6d71e5de76e052586a9"
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4 <data_table name="rnastar_index2x_versioned">
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e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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5 <output>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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6 <column name="value" />
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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7 <column name="dbkey" />
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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8 <column name="name" />
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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9 <column name="path" output_ref="out_file" >
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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10 <move type="directory" relativize_symlinks="True">
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cdc4d8a998e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
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11 <!-- <source>${path}</source>
cdc4d8a998e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
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12 out_file.extra_files_path is used as base by default
cdc4d8a998e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
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13 if no source, eg for type=directory, then refers to base
cdc4d8a998e1 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 0d434bca5083e908114d93e11094e48f49b98ed1
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14 -->
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64deddb6a8ec "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
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15 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">rnastar/${version}/${dbkey}/${value}/${path}</target>
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e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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16 </move>
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64deddb6a8ec "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
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17 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/rnastar/${version}/${dbkey}/${value}/${path}</value_translation>
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e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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18 <value_translation type="function">abspath</value_translation>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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19 </column>
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20 <column name="with_gene_model" />
f5eb9afa8f8a planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 9b68f6ae375aed38493f8399b8572347c750336d
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21 <column name="version" />
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22 </output>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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23 </data_table>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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24 </data_manager>
e4b87a00b1df planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_star_index_builder commit 3265247e909410db2a6d6087a2c0d3a9885c120c-dirty
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25 </data_managers>