Mercurial > repos > iuc > enasearch_retrieve_taxons
comparison enasearch_retrieve_taxons.xml @ 0:34d21959dc25 draft
planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87
author | iuc |
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date | Tue, 29 Aug 2017 04:14:07 -0400 |
parents | |
children | 8881ac3eebd7 |
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-1:000000000000 | 0:34d21959dc25 |
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1 <tool id="enasearch_retrieve_taxons" name="Retrieve ENA taxon data" version="@WRAPPER_VERSION@.0"> | |
2 <description></description> | |
3 <macros> | |
4 <import>macros.xml</import> | |
5 <import>search_macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <expand macro="version"/> | |
9 <command detect_errors="aggressive"><![CDATA[ | |
10 enasearch | |
11 retrieve_taxons | |
12 @IDS@ | |
13 #if $result | |
14 --result '$result' | |
15 #end if | |
16 @DISPLAY@ | |
17 $expanded | |
18 $header | |
19 --file '$output' | |
20 --download 'txt' | |
21 ]]></command> | |
22 <inputs> | |
23 <param argument="--ids" type="text" multiple="true" label="Ids for records to return"/> | |
24 <param argument="--result" type="select" optional="true" label="Taxonomy result to return"> | |
25 <expand macro="taxonomy_results"/> | |
26 </param> | |
27 <expand macro="display_opt"/> | |
28 <expand macro="expanded"/> | |
29 <expand macro="header"/> | |
30 </inputs> | |
31 <outputs> | |
32 <data name="output" format="tabular" label="${tool.name} on ${ids}"> | |
33 <expand macro="change_format"/> | |
34 </data> | |
35 </outputs> | |
36 <tests> | |
37 <test> | |
38 <param name="ids" value="6543"/> | |
39 <param name="result" value="sequence_release"/> | |
40 <conditional name="display_opt"> | |
41 <param name="display" value="fasta"/> | |
42 </conditional> | |
43 <output name="output" ftype="fasta" md5="e2fe353d00ffdec2f8b884903add458b"/> | |
44 </test> | |
45 <test> | |
46 <param name="ids" value="Human,Cat,Mouse,Zebrafish"/> | |
47 <conditional name="display_opt"> | |
48 <param name="display" value="xml"/> | |
49 </conditional> | |
50 <output name="output" ftype="xml" md5="0833f5ac248a3e7f382e4d53762fc71d"/> | |
51 </test> | |
52 </tests> | |
53 <help><![CDATA[ | |
54 **What it does** | |
55 | |
56 This tool retrieve ENA taxon data | |
57 ]]></help> | |
58 <expand macro="citations"/> | |
59 </tool> |