diff enasearch_retrieve_taxons.xml @ 0:34d21959dc25 draft

planemo upload for repository https://github.com/ASaiM/galaxytools/tree/master/tools/enasearch/ commit 6eda25f5cccc0cf9be09c38a8b48d37aff56ed87

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/enasearch_retrieve_taxons.xml	Tue Aug 29 04:14:07 2017 -0400
@@ -0,0 +1,59 @@
+<tool id="enasearch_retrieve_taxons" name="Retrieve ENA taxon data" version="@WRAPPER_VERSION@.0">
+    <description></description>
+    <macros>
+        <import>macros.xml</import>
+        <import>search_macros.xml</import>
+    </macros>
+    <expand macro="requirements"/>
+    <expand macro="version"/>
+    <command detect_errors="aggressive"><![CDATA[
+enasearch
+    retrieve_taxons
+    @IDS@
+    #if $result
+        --result '$result'
+    #end if
+    @DISPLAY@
+    $expanded
+    $header
+    --file '$output'
+    --download 'txt'
+    ]]></command>
+    <inputs>
+        <param argument="--ids" type="text" multiple="true" label="Ids for records to return"/>
+        <param argument="--result" type="select" optional="true" label="Taxonomy result to return">
+            <expand macro="taxonomy_results"/>
+        </param>
+        <expand macro="display_opt"/>
+        <expand macro="expanded"/>
+        <expand macro="header"/>
+    </inputs>
+    <outputs>
+        <data name="output" format="tabular" label="${tool.name} on ${ids}">
+            <expand macro="change_format"/>
+        </data>
+    </outputs>
+    <tests>
+        <test>
+            <param name="ids" value="6543"/>
+            <param name="result" value="sequence_release"/>
+            <conditional name="display_opt">
+                <param name="display" value="fasta"/>
+            </conditional>
+            <output name="output" ftype="fasta" md5="e2fe353d00ffdec2f8b884903add458b"/>
+        </test>
+        <test>
+            <param name="ids" value="Human,Cat,Mouse,Zebrafish"/>
+            <conditional name="display_opt">
+                <param name="display" value="xml"/>
+            </conditional>
+            <output name="output" ftype="xml" md5="0833f5ac248a3e7f382e4d53762fc71d"/>
+        </test>
+    </tests>
+    <help><![CDATA[
+**What it does**
+
+This tool retrieve ENA taxon data
+    ]]></help>
+    <expand macro="citations"/>
+</tool>