Mercurial > repos > iuc > gffcompare
view test-data/gffcompare_out3.stats @ 3:2bb86e2c417f draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit c8a752199588db982182cbe7fffbcb8512313526
| author | iuc |
|---|---|
| date | Mon, 27 May 2019 13:54:15 -0400 |
| parents | |
| children | 0f710191a66d |
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# gffcompare v0.10.6 | Command line was: #gffcompare -r ref_annotation -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf # #= Summary for dataset: gffcompare_in4_gtf # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) # (3 multi-transcript loci, ~1.2 transcripts per locus) # Reference mRNAs : 20 in 7 loci (19 multi-exon) # Super-loci w/ reference transcripts: 6 #-----------------| Sensitivity | Precision | Base level: 72.6 | 60.7 | Exon level: 80.0 | 55.7 | Intron level: 81.2 | 64.4 | Intron chain level: 10.5 | 13.3 | Transcript level: 10.0 | 5.7 | Locus level: 28.6 | 6.9 | Matching intron chains: 2 Matching transcripts: 2 Matching loci: 2 Missed exons: 3/85 ( 3.5%) Novel exons: 46/122 ( 37.7%) Missed introns: 11/69 ( 15.9%) Novel introns: 28/87 ( 32.2%) Missed loci: 0/7 ( 0.0%) Novel loci: 15/29 ( 51.7%) Total union super-loci across all input datasets: 21 35 out of 35 consensus transcripts written in gffcmp.annotated.gtf (0 discarded as redundant)