comparison test-data/226.0-data/skani/create_genome_paths.sh @ 16:28bc8c01b193 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/gtdbtk commit 1fb19cc0b5b0db43fcb899afc97cba727a3d6a8b

15:53a019316350

#!/bin/bash

DATAPATH='database'


for f in $DATAPATH/*.gz
do
  mkdir --parents database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ ; mv $f $_
  filef="$(basename -- $f)"
  echo "$filef database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ " >> genome_paths.tsv
  #echo "$filef database/${f:9:3}/${f:13:3}/${f:16:3}/${f:19:3}/ "
done