Mercurial > repos > iuc > halfdeep

changeset 1:a53e299fe1cb draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/halfdeep commit 6a77207f883c3e7732b318968fe5f87a6762e24f
author iuc
date Thu, 12 Dec 2024 09:08:40 +0000
parents 607d5e33c4c2
children ab8373ba3830
files halfdeep.xml macros.xml
diffstat 2 files changed, 4 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/halfdeep.xml	Thu Dec 05 16:57:06 2024 +0000
+++ b/halfdeep.xml	Thu Dec 12 09:08:40 2024 +0000
@@ -30,9 +30,9 @@
         ## mapped reads
         ##
         #if $mapped_reads
-            ln -s '$mapped_reads' 'halfdeep/ref/mapped_reads/${reads_base}.bam' &&
-            ln -s '${reads_base}.bam' 'halfdeep/ref/mapped_reads/${reads_base}.sort.bam' &&
-            ln -s '$mapped_reads.metadata.bam_index' 'halfdeep/ref/mapped_reads/${reads_base}.sort.bam.bai' &&
+            ln -s '$mapped_reads' 'halfdeep/ref/mapped_reads/${reads_base}${reads.ext}.bam' &&
+            ln -s '${reads_base}${reads.ext}.bam' 'halfdeep/ref/mapped_reads/${reads_base}${reads.ext}.sort.bam' &&
+            ln -s '$mapped_reads.metadata.bam_index' 'halfdeep/ref/mapped_reads/${reads_base}{reads.ext}.sort.bam.bai' &&
         #end if
         ##
         ## run bam_depth.sh
--- a/macros.xml	Thu Dec 05 16:57:06 2024 +0000
+++ b/macros.xml	Thu Dec 12 09:08:40 2024 +0000
@@ -5,7 +5,7 @@
         </requirements>
     </xml>
     <token name="@TOOL_VERSION@">0.1.0</token>
-    <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX@">1</token>
     <token name="@PROFILE@">21.05</token>
     <xml name="citations">
         <citations>