Mercurial > repos > iuc > halfdeep
changeset 2:ab8373ba3830 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/halfdeep commit 8c89adcf33dc75d6bd315369bdeadb26fb6c17f9
| author | iuc |
|---|---|
| date | Thu, 12 Dec 2024 22:09:19 +0000 |
| parents | a53e299fe1cb |
| children | |
| files | halfdeep.xml macros.xml |
| diffstat | 2 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/halfdeep.xml Thu Dec 12 09:08:40 2024 +0000 +++ b/halfdeep.xml Thu Dec 12 22:09:19 2024 +0000 @@ -30,9 +30,9 @@ ## mapped reads ## #if $mapped_reads - ln -s '$mapped_reads' 'halfdeep/ref/mapped_reads/${reads_base}${reads.ext}.bam' && - ln -s '${reads_base}${reads.ext}.bam' 'halfdeep/ref/mapped_reads/${reads_base}${reads.ext}.sort.bam' && - ln -s '$mapped_reads.metadata.bam_index' 'halfdeep/ref/mapped_reads/${reads_base}{reads.ext}.sort.bam.bai' && + ln -s '$mapped_reads' 'halfdeep/ref/mapped_reads/${reads_base}.${reads.ext}.bam' && + ln -s '${reads_base}.${reads.ext}.bam' 'halfdeep/ref/mapped_reads/${reads_base}.${reads.ext}.sort.bam' && + ln -s '$mapped_reads.metadata.bam_index' 'halfdeep/ref/mapped_reads/${reads_base}.${reads.ext}.sort.bam.bai' && #end if ## ## run bam_depth.sh
--- a/macros.xml Thu Dec 12 09:08:40 2024 +0000 +++ b/macros.xml Thu Dec 12 22:09:19 2024 +0000 @@ -5,7 +5,7 @@ </requirements> </xml> <token name="@TOOL_VERSION@">0.1.0</token> - <token name="@VERSION_SUFFIX@">1</token> + <token name="@VERSION_SUFFIX@">2</token> <token name="@PROFILE@">21.05</token> <xml name="citations"> <citations>