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changeset 19:fbf98f24097b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hisat2 commit 9bbf35d7f47e5ab6b78248c9907b71446d4e7b0c
author iuc
date Tue, 10 Apr 2018 18:41:43 -0400
parents 764756ab0eb5
children 6ab42baa56e9
files hisat2.xml
diffstat 1 files changed, 2 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- a/hisat2.xml	Mon Mar 26 17:23:52 2018 -0400
+++ b/hisat2.xml	Tue Apr 10 18:41:43 2018 -0400
@@ -14,6 +14,8 @@
     </stdio>
     <version_command>hisat2 --version</version_command>
     <command><![CDATA[
+## Use pipefail if available to quit with first non-zero exit code
+set -o | grep -q pipefail && set -o pipefail;
 
 ## Prepare HISAT2 index