Mercurial > repos > iuc > hmmer_nhmmer
diff test-data/phmmer.out @ 4:be0cc39776f9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hmmer3 commit 7c3ac4ad5a64b737e1b8f73c522e006097596f1d
| author | iuc |
|---|---|
| date | Mon, 11 Jun 2018 15:52:05 -0400 |
| parents | f239ab5f45f4 |
| children | b28e8ed99424 |
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--- a/test-data/phmmer.out Sat Apr 07 03:50:51 2018 -0400 +++ b/test-data/phmmer.out Mon Jun 11 15:52:05 2018 -0400 @@ -1,18 +1,18 @@ # phmmer :: search a protein sequence against a protein database -# HMMER 3.1b1 (May 2013); http://hmmer.org/ -# Copyright (C) 2013 Howard Hughes Medical Institute. -# Freely distributed under the GNU General Public License (GPLv3). +# HMMER 3.2 (June 2018); http://hmmer.org/ +# Copyright (C) 2018 Howard Hughes Medical Institute. +# Freely distributed under the BSD open source license. # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -# query sequence file: test-data/globins45.fa -# target sequence database: test-data/uniprot_matches.fasta -# per-seq hits tabular output: test-data/phmmer.tblout -# per-dom hits tabular output: test-data/phmmer.domtblout -# pfam-style tabular hit output: test-data/phmmer.pfamtblout +# query sequence file: /tmp/tmpp4O0Ju/files/000/dataset_45.dat +# target sequence database: /tmp/tmpp4O0Ju/files/000/dataset_46.dat +# per-seq hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_48.dat +# per-dom hits tabular output: /tmp/tmpp4O0Ju/files/000/dataset_49.dat +# pfam-style tabular hit output: /tmp/tmpp4O0Ju/files/000/dataset_50.dat # max ASCII text line length: unlimited # Vit filter P threshold: <= 0.001 # Fwd filter P threshold: <= 1e-05 # random number seed set to: 4 -# number of worker threads: 2 +# number of worker threads: 1 # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: MYG_ESCGI [L=153] @@ -53,16 +53,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.67 // Query: MYG_HORSE [L=153] Scores for complete sequences (score includes all domains): @@ -102,16 +102,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.15 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.81 // Query: MYG_PROGU [L=153] Scores for complete sequences (score includes all domains): @@ -151,16 +151,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.81 // Query: MYG_SAISC [L=153] Scores for complete sequences (score includes all domains): @@ -200,16 +200,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.78 // Query: MYG_LYCPI [L=153] Scores for complete sequences (score includes all domains): @@ -249,16 +249,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.15 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.74 // Query: MYG_MOUSE [L=153] Scores for complete sequences (score includes all domains): @@ -298,16 +298,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (153 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (153 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.54 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.78 // Query: MYG_MUSAN [L=148] Scores for complete sequences (score includes all domains): @@ -347,16 +347,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (148 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (148 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.48 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.88 // Query: HBA_AILME [L=141] Scores for complete sequences (score includes all domains): @@ -396,16 +396,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBA_PROLO [L=141] Scores for complete sequences (score includes all domains): @@ -445,16 +445,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.73 // Query: HBA_PAGLA [L=141] Scores for complete sequences (score includes all domains): @@ -494,16 +494,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.33 // Query: HBA_MACFA [L=141] Scores for complete sequences (score includes all domains): @@ -543,16 +543,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.65 // Query: HBA_MACSI [L=141] Scores for complete sequences (score includes all domains): @@ -592,16 +592,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.73 // Query: HBA_PONPY [L=141] Scores for complete sequences (score includes all domains): @@ -641,16 +641,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.67 // Query: HBA2_GALCR [L=141] Scores for complete sequences (score includes all domains): @@ -690,16 +690,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.68 // Query: HBA_MESAU [L=141] Scores for complete sequences (score includes all domains): @@ -739,16 +739,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.41 // Query: HBA2_BOSMU [L=141] Scores for complete sequences (score includes all domains): @@ -788,16 +788,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 -# Mc/sec: 2.12 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.64 // Query: HBA_ERIEU [L=141] Scores for complete sequences (score includes all domains): @@ -837,16 +837,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.76 // Query: HBA_FRAPO [L=141] Scores for complete sequences (score includes all domains): @@ -886,16 +886,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.70 // Query: HBA_PHACO [L=141] Scores for complete sequences (score includes all domains): @@ -935,16 +935,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.56 // Query: HBA_TRIOC [L=141] Scores for complete sequences (score includes all domains): @@ -984,16 +984,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.35 // Query: HBA_ANSSE [L=141] Scores for complete sequences (score includes all domains): @@ -1033,16 +1033,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.52 // Query: HBA_COLLI [L=141] Scores for complete sequences (score includes all domains): @@ -1082,16 +1082,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.41 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.79 // Query: HBAD_CHLME [L=141] Scores for complete sequences (score includes all domains): @@ -1131,16 +1131,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // Query: HBAD_PASMO [L=141] Scores for complete sequences (score includes all domains): @@ -1180,16 +1180,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.10 // Query: HBAZ_HORSE [L=141] Scores for complete sequences (score includes all domains): @@ -1229,16 +1229,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (141 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (141 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.06 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.21 // Query: HBA4_SALIR [L=142] Scores for complete sequences (score includes all domains): @@ -1278,16 +1278,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (142 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (142 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.07 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.72 // Query: HBB_ORNAN [L=146] Scores for complete sequences (score includes all domains): @@ -1327,16 +1327,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.01s 00:00:00.05 Elapsed: 00:00:00.05 -# Mc/sec: 0.88 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.63 // Query: HBB_TACAC [L=146] Scores for complete sequences (score includes all domains): @@ -1376,16 +1376,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.82 // Query: HBE_PONPY [L=146] Scores for complete sequences (score includes all domains): @@ -1425,16 +1425,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.02 +# Mc/sec: 1.68 // Query: HBB_SPECI [L=146] Scores for complete sequences (score includes all domains): @@ -1474,16 +1474,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.16 // Query: HBB_SPETO [L=146] Scores for complete sequences (score includes all domains): @@ -1523,16 +1523,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.50 // Query: HBB_EQUHE [L=146] Scores for complete sequences (score includes all domains): @@ -1572,16 +1572,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.16 // Query: HBB_SUNMU [L=146] Scores for complete sequences (score includes all domains): @@ -1621,16 +1621,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 2.00 // Query: HBB_CALAR [L=146] Scores for complete sequences (score includes all domains): @@ -1670,16 +1670,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.01s 00:00:00.03 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // Query: HBB_MANSP [L=146] Scores for complete sequences (score includes all domains): @@ -1719,16 +1719,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.86 // Query: HBB_URSMA [L=146] Scores for complete sequences (score includes all domains): @@ -1768,16 +1768,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.65 // Query: HBB_RABIT [L=146] Scores for complete sequences (score includes all domains): @@ -1817,16 +1817,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.57 // Query: HBB_TUPGL [L=146] Scores for complete sequences (score includes all domains): @@ -1866,16 +1866,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBB_TRIIN [L=146] Scores for complete sequences (score includes all domains): @@ -1915,16 +1915,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.01u 0.00s 00:00:00.01 Elapsed: 00:00:00.01 +# Mc/sec: 2.80 // Query: HBB_COLLI [L=146] Scores for complete sequences (score includes all domains): @@ -1964,16 +1964,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.04u 0.00s 00:00:00.04 Elapsed: 00:00:00.04 -# Mc/sec: 1.10 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.01 +# Mc/sec: 2.22 // Query: HBB_LARRI [L=146] Scores for complete sequences (score includes all domains): @@ -2013,16 +2013,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.82 // Query: HBB1_VAREX [L=146] Scores for complete sequences (score includes all domains): @@ -2062,16 +2062,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.75 // Query: HBB2_XENTR [L=146] Scores for complete sequences (score includes all domains): @@ -2111,16 +2111,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.02 +# Mc/sec: 1.82 // Query: HBBL_RANCA [L=146] Scores for complete sequences (score includes all domains): @@ -2160,16 +2160,16 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (146 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (146 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 2 (1); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 2 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.03 -# Mc/sec: 1.46 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.80 // Query: HBB2_TRICR [L=145] Scores for complete sequences (score includes all domains): @@ -2196,15 +2196,15 @@ Internal pipeline statistics summary: ------------------------------------- -Query model(s): 1 (145 nodes) -Target sequences: 2 (301 residues searched) +Query model(s): 1 (145 nodes) +Target sequences: 2 (301 residues searched) Passed MSV filter: 2 (1); expected 0.0 (0.02) Passed bias filter: 2 (1); expected 0.0 (0.02) Passed Vit filter: 2 (1); expected 0.0 (0.001) Passed Fwd filter: 1 (0.5); expected 0.0 (1e-05) Initial search space (Z): 2 [actual number of targets] Domain search space (domZ): 1 [number of targets reported over threshold] -# CPU time: 0.03u 0.00s 00:00:00.03 Elapsed: 00:00:00.04 -# Mc/sec: 1.09 +# CPU time: 0.02u 0.00s 00:00:00.02 Elapsed: 00:00:00.02 +# Mc/sec: 1.87 // [ok]