Mercurial > repos > iuc > hyphy_absrel
annotate test-data/absrel-out1.json @ 16:4cc4dbca2f02 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
author | iuc |
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date | Fri, 18 Sep 2020 21:10:47 +0000 |
parents | 419cd817299c |
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rev | line source |
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419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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1 { |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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2 "analysis":{ |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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3 "authors":"Sergei L Kosakovsky Pond, Ben Murrell, Steven Weaver and Temple iGEM / UCSD viral evolution group", |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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4 "citation":"Less Is More: An Adaptive Branch-Site Random Effects Model for Efficient Detection of Episodic Diversifying Selection (2015). Mol Biol Evol 32 (5): 1342-1353. v2.2 adds support for multiple-hit models", |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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5 "contact":"spond@temple.edu", |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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6 "info":"aBSREL (Adaptive branch-site random effects likelihood)\n uses an adaptive random effects branch-site model framework\n to test whether each branch has evolved under positive selection,\n using a procedure which infers an optimal number of rate categories per branch.", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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7 "requirements":"in-frame codon alignment and a phylogenetic tree", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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8 "version":"2.2" |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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9 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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10 "branch attributes":{ |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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11 "0":{ |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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12 "Baboon":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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13 "Baseline MG94xREV":0.001816807585564731, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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14 "Baseline MG94xREV omega ratio":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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15 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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16 "Full adaptive model":0.001810407118394509, |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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17 "LRT":0, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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18 "Nucleotide GTR":0.001678881906620672, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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19 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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20 [0, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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21 ], |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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22 "Rate classes":1, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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23 "Uncorrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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24 "original name":"Baboon", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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25 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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26 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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27 "Cat":{ |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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28 "Baseline MG94xREV":0.2286001363527903, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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29 "Baseline MG94xREV omega ratio":1.403298474422089, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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30 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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31 "Full adaptive model":0.1219386838393392, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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32 "LRT":1.644967676056694, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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33 "Nucleotide GTR":0.265904547400163, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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34 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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35 [0.2130519766306851, 0.6352283641519592], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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36 [2.628217450705319, 0.3647716358480408] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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37 ], |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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38 "Rate classes":2, |
16
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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39 "Uncorrected P-value":0.171730764045231, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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40 "original name":"Cat", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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41 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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42 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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43 "Chimp":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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44 "Baseline MG94xREV":0.001840311209746262, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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45 "Baseline MG94xREV omega ratio":10000000000, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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46 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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47 "Full adaptive model":0.001841979303044237, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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48 "LRT":0.6159123786974305, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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49 "Nucleotide GTR":0.001816713800925801, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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50 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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51 [10000000000, 1] |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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52 ], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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53 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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54 "Uncorrected P-value":0.3069983227523322, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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55 "original name":"Chimp", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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56 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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57 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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58 "Cow":{ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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59 "Baseline MG94xREV":0.2070244948790512, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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60 "Baseline MG94xREV omega ratio":2.153434974462683, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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61 "Corrected P-value":0.5006146299996015, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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62 "Full adaptive model":0.1241125417707662, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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63 "LRT":4.898194538953248, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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64 "Nucleotide GTR":0.2481512612523618, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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65 "Rate Distributions": [ |
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66 [0, 0.52318726440949], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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67 [2.444056517734385, 0.47681273559051] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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68 ], |
16
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69 "Rate classes":2, |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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70 "Uncorrected P-value":0.03128841437497509, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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71 "original name":"Cow", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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72 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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73 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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74 "Horse":{ |
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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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75 "Baseline MG94xREV":0.190365915457708, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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76 "Baseline MG94xREV omega ratio":1.182933895494305, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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77 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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78 "Full adaptive model":0.0869489794025302, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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|
79 "LRT":2.047309801283518, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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|
80 "Nucleotide GTR":0.2090927256979082, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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81 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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|
82 [0, 0.5397658078247131], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
83 [1.633257246666139, 0.4602341921752869] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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diff
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|
84 ], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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diff
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|
85 "Rate classes":2, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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|
86 "Uncorrected P-value":0.1382789032066179, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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87 "original name":"Horse", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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88 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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|
89 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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90 "Human":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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91 "Baseline MG94xREV":0, |
4cc4dbca2f02
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iuc
parents:
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92 "Baseline MG94xREV omega ratio":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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93 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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94 "Full adaptive model":0, |
4cc4dbca2f02
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iuc
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diff
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95 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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96 "Nucleotide GTR":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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97 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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98 [1, 1] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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99 ], |
4cc4dbca2f02
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iuc
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diff
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100 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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101 "Uncorrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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102 "original name":"Human", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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103 "rate at which 2 nucleotides are changed instantly within a single codon":0.0006106118725184574 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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104 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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105 "Mouse":{ |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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106 "Baseline MG94xREV":0.1083167307250788, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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107 "Baseline MG94xREV omega ratio":0.5108576904540283, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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108 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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109 "Full adaptive model":0.1078010043714489, |
4cc4dbca2f02
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iuc
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110 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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111 "Nucleotide GTR":0.1181001275359051, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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112 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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|
113 [0.5087375113796073, 1] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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114 ], |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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diff
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115 "Rate classes":1, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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116 "Uncorrected P-value":1, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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117 "original name":"Mouse", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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118 "rate at which 2 nucleotides are changed instantly within a single codon":0.4244832903005548 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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119 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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120 "Node1":{ |
16
4cc4dbca2f02
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iuc
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0
diff
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121 "Baseline MG94xREV":0.2542393300501047, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
diff
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122 "Baseline MG94xREV omega ratio":0.2997498382776075, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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123 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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diff
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124 "Full adaptive model":0.2550466752020236, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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125 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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126 "Nucleotide GTR":0.2767426965701868, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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127 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
128 [0.2932817609633239, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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129 ], |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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130 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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131 "Uncorrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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132 "rate at which 2 nucleotides are changed instantly within a single codon":0.9114373463003921 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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133 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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134 "Node12":{ |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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135 "Baseline MG94xREV":0.01400815185374474, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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136 "Baseline MG94xREV omega ratio":0.2754467062829232, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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137 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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138 "Full adaptive model":0.01437973904273591, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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139 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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140 "Nucleotide GTR":0.01784721909304638, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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141 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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|
142 [0.3037614070859027, 1] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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143 ], |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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144 "Rate classes":1, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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145 "Uncorrected P-value":1, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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146 "rate at which 2 nucleotides are changed instantly within a single codon":0.5084909616267814 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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147 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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148 "Node2":{ |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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149 "Baseline MG94xREV":0.0400106272595141, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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150 "Baseline MG94xREV omega ratio":0.116408812566168, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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151 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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152 "Full adaptive model":0.03991940069030483, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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153 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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154 "Nucleotide GTR":0.06613304839358287, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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155 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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|
156 [0.1193993042178124, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
parents:
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157 ], |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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158 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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159 "Uncorrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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160 "rate at which 2 nucleotides are changed instantly within a single codon":9.28646275825122 |
0
419cd817299c
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iuc
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161 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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162 "Node3":{ |
16
4cc4dbca2f02
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iuc
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0
diff
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|
163 "Baseline MG94xREV":0.08548068002443369, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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|
164 "Baseline MG94xREV omega ratio":1.293385437932658, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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165 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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diff
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166 "Full adaptive model":0.08590119038008139, |
4cc4dbca2f02
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iuc
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diff
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|
167 "LRT":0.1383887036890883, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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168 "Nucleotide GTR":0.09881178513658169, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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169 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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170 [1.330576641567385, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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171 ], |
16
4cc4dbca2f02
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iuc
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172 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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173 "Uncorrected P-value":0.4219212196398351, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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174 "rate at which 2 nucleotides are changed instantly within a single codon":0.8390789546113498 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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175 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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176 "Node8":{ |
16
4cc4dbca2f02
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iuc
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177 "Baseline MG94xREV":0.09463393920061362, |
4cc4dbca2f02
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iuc
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178 "Baseline MG94xREV omega ratio":1.862136443854597, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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179 "Corrected P-value":1, |
4cc4dbca2f02
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iuc
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180 "Full adaptive model":0.0958035263641453, |
4cc4dbca2f02
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iuc
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diff
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181 "LRT":0.7150293976401372, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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182 "Nucleotide GTR":0.1062333225692588, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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183 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
184 [1.883870769808856, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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185 ], |
16
4cc4dbca2f02
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iuc
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186 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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187 "Uncorrected P-value":0.2893795680778183, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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|
188 "rate at which 2 nucleotides are changed instantly within a single codon":0.512238843416092 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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189 }, |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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190 "Node9":{ |
16
4cc4dbca2f02
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iuc
parents:
0
diff
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|
191 "Baseline MG94xREV":0.02846111726225027, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
diff
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|
192 "Baseline MG94xREV omega ratio":0.4321055128385307, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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193 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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194 "Full adaptive model":0.02810856974543091, |
4cc4dbca2f02
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iuc
parents:
0
diff
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195 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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196 "Nucleotide GTR":0.02566185438854229, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
197 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
198 [0.4185836885800617, 1] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
199 ], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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diff
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200 "Rate classes":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
201 "Uncorrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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202 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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203 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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204 "Pig":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
205 "Baseline MG94xREV":0.1782835053555321, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
206 "Baseline MG94xREV omega ratio":1.275728452678247, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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207 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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208 "Full adaptive model":0.1729188354138871, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
209 "LRT":0.3324036585026988, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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210 "Nucleotide GTR":0.1871760137183495, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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|
211 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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|
212 [1.235108129487059, 1] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
diff
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|
213 ], |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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214 "Rate classes":1, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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215 "Uncorrected P-value":0.3669120164240152, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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216 "original name":"Pig", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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217 "rate at which 2 nucleotides are changed instantly within a single codon":0.1143447431158695 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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218 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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219 "Rat":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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220 "Baseline MG94xREV":0.06315403896300904, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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221 "Baseline MG94xREV omega ratio":0.8744850915248316, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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0
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222 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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223 "Full adaptive model":0.06408078523886611, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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224 "LRT":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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225 "Nucleotide GTR":0.0666364425850592, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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226 "Rate Distributions": [ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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|
227 [0.8782045320352186, 1] |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
parents:
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228 ], |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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229 "Rate classes":1, |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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230 "Uncorrected P-value":1, |
16
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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231 "original name":"Rat", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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232 "rate at which 2 nucleotides are changed instantly within a single codon":0.1346164190615118 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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233 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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234 "RhMonkey":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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235 "Baseline MG94xREV":0.003671939837747083, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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236 "Baseline MG94xREV omega ratio":10000000000, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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237 "Corrected P-value":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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238 "Full adaptive model":0.003675047654636179, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
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239 "LRT":1.165062770327495, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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240 "Nucleotide GTR":0.003777016173741061, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
parents:
0
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241 "Rate Distributions": [ |
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242 [10000000000, 1] |
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243 ], |
4cc4dbca2f02
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244 "Rate classes":1, |
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245 "Uncorrected P-value":0.2236284592802686, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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246 "original name":"RhMonkey", |
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247 "rate at which 2 nucleotides are changed instantly within a single codon":0 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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248 } |
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249 }, |
419cd817299c
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250 "attributes":{ |
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251 "Baseline MG94xREV":{ |
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252 "attribute type":"branch length", |
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253 "display order":1 |
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254 }, |
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255 "Baseline MG94xREV omega ratio":{ |
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256 "attribute type":"branch label", |
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257 "display order":1 |
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258 }, |
16
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259 "Corrected P-value":{ |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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260 "attribute type":"branch label", |
16
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261 "display order":6 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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262 }, |
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263 "Full adaptive model":{ |
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264 "attribute type":"branch length", |
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265 "display order":2 |
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266 }, |
16
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267 "LRT":{ |
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268 "attribute type":"branch label", |
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269 "display order":4 |
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270 }, |
4cc4dbca2f02
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271 "Nucleotide GTR":{ |
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272 "attribute type":"branch length", |
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273 "display order":0 |
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274 }, |
0
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275 "Rate Distributions":{ |
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276 "attribute type":"branch label", |
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277 "display order":3 |
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278 }, |
16
4cc4dbca2f02
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279 "Rate classes":{ |
0
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280 "attribute type":"branch label", |
16
4cc4dbca2f02
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281 "display order":2 |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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282 }, |
419cd817299c
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283 "Uncorrected P-value":{ |
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284 "attribute type":"branch label", |
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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285 "display order":5 |
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286 }, |
16
4cc4dbca2f02
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287 "original name":{ |
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288 "attribute type":"node label", |
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289 "display order":-1 |
4cc4dbca2f02
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290 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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291 "rate at which 2 nucleotides are changed instantly within a single codon":{ |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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292 "attribute type":"branch label", |
16
4cc4dbca2f02
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293 "display order":7 |
0
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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
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294 } |
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295 } |
16
4cc4dbca2f02
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296 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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297 "data partitions":{ |
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298 "0":{ |
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299 "coverage": [ |
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300 [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 163, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186] |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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301 ], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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302 "name":"absrel.filter.default" |
4cc4dbca2f02
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303 } |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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304 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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305 "fits":{ |
4cc4dbca2f02
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306 "Baseline MG94xREV":{ |
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iuc
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307 "AIC-c":6983.763305606333, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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308 "Equilibrium frequencies": [ |
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iuc
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309 [0.04875339327772683], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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310 [0.03982858547830345], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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311 [0.04946803524790992], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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312 [0.04152216138298744], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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313 [0.01811683453600613], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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314 [0.01480036248560469], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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315 [0.0183823965708893], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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316 [0.01542969784826435], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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317 [0.01894694796506697], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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318 [0.01547851515238824], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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319 [0.01922467805342367], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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320 [0.01613668666381816], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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321 [0.02832099415740372], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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368 [0.01415821524731906], |
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369 [0.01188403168729233] |
4cc4dbca2f02
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370 ], |
4cc4dbca2f02
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371 "Log Likelihood":-3427.720059001285, |
4cc4dbca2f02
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372 "Rate Distributions":{ |
4cc4dbca2f02
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373 "Per-branch delta":{ |
4cc4dbca2f02
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374 "2.5%":0, |
4cc4dbca2f02
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375 "97.5%":12.07373117808175, |
4cc4dbca2f02
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376 "Mean":1.277646334033236, |
4cc4dbca2f02
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377 "Median":0.4551223038316586 |
4cc4dbca2f02
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378 }, |
4cc4dbca2f02
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379 "Per-branch omega":{ |
4cc4dbca2f02
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380 "2.5%":0, |
4cc4dbca2f02
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381 "97.5%":2.153434974462683, |
4cc4dbca2f02
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382 "Mean":666666667.5119981, |
4cc4dbca2f02
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383 "Median":1 |
4cc4dbca2f02
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384 } |
4cc4dbca2f02
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385 }, |
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386 "display order":1, |
4cc4dbca2f02
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387 "estimated parameters":62 |
4cc4dbca2f02
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388 }, |
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389 "Full adaptive model":{ |
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390 "AIC-c":6972.859938351839, |
4cc4dbca2f02
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391 "Log Likelihood":-3415.824749853321, |
4cc4dbca2f02
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392 "Rate Distributions":{ |
4cc4dbca2f02
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393 }, |
4cc4dbca2f02
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394 "display order":2, |
4cc4dbca2f02
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|
395 "estimated parameters":68 |
4cc4dbca2f02
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396 }, |
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397 "Nucleotide GTR":{ |
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398 "AIC-c":7112.857317645923, |
4cc4dbca2f02
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399 "Equilibrium frequencies": [ |
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400 [0.3592490842490842], |
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401 [0.181959706959707], |
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402 [0.240018315018315], |
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403 [0.2187728937728937] |
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404 ], |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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405 "Log Likelihood":-3532.321228205235, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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406 "Rate Distributions":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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|
407 "Substitution rate from nucleotide A to nucleotide C":0.5498703043473002, |
4cc4dbca2f02
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iuc
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|
408 "Substitution rate from nucleotide A to nucleotide G":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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|
409 "Substitution rate from nucleotide A to nucleotide T":0.2646979624678532, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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410 "Substitution rate from nucleotide C to nucleotide G":0.4921328068285813, |
4cc4dbca2f02
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iuc
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411 "Substitution rate from nucleotide C to nucleotide T":1.028960084526602, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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412 "Substitution rate from nucleotide G to nucleotide T":0.3044365000595399 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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413 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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414 "display order":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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415 "estimated parameters":24 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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416 } |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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417 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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418 "input":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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419 "file name":"/tmp/tmpx_42i6f0/job_working_directory/000/6/working/./absrel_input.fa", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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420 "number of sequences":10, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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421 "number of sites":187, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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422 "partition count":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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423 "trees":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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424 "0":"((((Pig:0.147969,Cow:0.21343)Node3:0.08509899999999999,Horse:0.165787,Cat:0.264806)Node2:0.058611,((RhMonkey:0.002015,Baboon:0.003108)Node9:0.022733,(Human:0.004349,Chimp:0.000799)Node12:0.011873)Node8:0.101856)Node1:0.340802,Rat:0.050958,Mouse:0.09795)" |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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425 } |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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426 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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427 "test results":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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428 "P-value threshold":0.05, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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429 "positive test results":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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430 "tested":16 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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431 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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432 "tested":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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433 "0":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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434 "Baboon":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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435 "Cat":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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436 "Chimp":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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437 "Cow":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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438 "Horse":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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439 "Human":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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440 "Mouse":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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441 "Node1":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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442 "Node12":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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443 "Node2":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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444 "Node3":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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445 "Node8":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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446 "Node9":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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447 "Pig":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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448 "Rat":"test", |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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449 "RhMonkey":"test" |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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450 } |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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451 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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452 "timers":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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453 "Baseline model fitting":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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454 "order":2, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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455 "timer":17 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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456 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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457 "Complexity analysis":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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458 "order":3, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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459 "timer":110 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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460 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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461 "Full adaptive model fitting":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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462 "order":4, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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463 "timer":20 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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464 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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465 "Overall":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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466 "order":0, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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467 "timer":259 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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468 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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469 "Preliminary model fitting":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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470 "order":1, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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471 "timer":0 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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472 }, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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473 "Testing for selection":{ |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
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474 "order":5, |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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475 "timer":112 |
4cc4dbca2f02
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 7868bb22136a87ff5120042ce90bc6be87d57d80"
iuc
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476 } |
0
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
parents:
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477 } |
419cd817299c
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/hyphy/ commit 538d41e9789e18c8edb3dc68a1aabbee9b9f8bea
iuc
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478 } |