Mercurial > repos > iuc > idba_hybrid

annotate test-data/out/log @ 0:a81c5169e9fc draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
author iuc
date Mon, 05 Aug 2019 15:59:15 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
1 number of threads 4
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
2 reads 302
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
3 long reads 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
4 extra reads 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
5 read_length 76
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
6 kmer 20
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
7 kmers 728 727
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
8 merge bubble 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
9 contigs: 1 n50: 747 max: 747 mean: 747 total length: 747 n80: 747
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
10 aligned 300 reads
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
11 confirmed bases: 690 correct reads: 230 bases: 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
12 distance mean 214 sd 49.643
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
13 seed contigs 1 local contigs 2
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
14 kmer 40
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
15 kmers 710 709
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
16 merge bubble 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
17 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
18 aligned 302 reads
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
19 confirmed bases: 692 correct reads: 231 bases: 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
20 distance mean 213.649 sd 49.4062
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
21 seed contigs 1 local contigs 2
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
22 kmer 60
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
23 kmers 690 689
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
24 merge bubble 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
25 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
26 aligned 302 reads
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
27 confirmed bases: 692 correct reads: 231 bases: 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
28 distance mean 213.649 sd 49.4062
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
29 seed contigs 1 local contigs 2
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
30 kmer 80
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
31 kmers 670 669
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
32 merge bubble 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
33 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
34 aligned 302 reads
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
35 confirmed bases: 692 correct reads: 231 bases: 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
36 distance mean 213.649 sd 49.4062
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
37 seed contigs 1 local contigs 2
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
38 kmer 100
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
39 kmers 650 649
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
40 merge bubble 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
41 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
42 reads 302
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
43 aligned 302 reads
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
44 distance mean 213.649 sd 49.4062
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
45 expected coverage 0.448071
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
46 edgs 0
a81c5169e9fc planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/idba_ud commit 61e1699e65d6fd9f4f73650ed8463b37cd701344
iuc
parents:
diff changeset
47 contigs: 1 n50: 749 max: 749 mean: 749 total length: 749 n80: 749