Mercurial > repos > iuc > medaka_variant_pipeline

annotate test-data/annotate_vcf_test.vcf @ 4:5c959a2dde5f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit c02f74da66f51b431b7cd8bd0d1cffde267e3332"
author iuc
date Tue, 13 Oct 2020 15:59:54 +0000
parents 148f32860445
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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3
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
1 ##fileformat=VCFv4.1
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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2 ##medaka_version=1.0.3
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
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3 ##contig=<ID=NC_045512.2>
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
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4 ##FORMAT=<ID=GT,Number=1,Type=String,Description="Medaka genotype.">
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
5 ##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Medaka genotype quality score">
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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6 #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT SAMPLE
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
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7 NC_045512.2 45 . G C 46.359 PASS GT:GQ 1:46
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
diff changeset
8 NC_045512.2 685 . AAAGTCATTT A 260.487 PASS GT:GQ 1:260
148f32860445 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/medaka commit e80b649094384fc6d7a8f917300db3550cc99a44"
iuc
parents:
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9 NC_045512.2 1813 . TA T 11.034 PASS GT:GQ 1:11