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diff test-data/taxonomic_analysis_lsu_rrna/MGYS00002316_metadata.tsv @ 1:b613e5dd5e83 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/mg_toolkit commit df500c27a6ef0ea25e0361feada7df8dedee98f1
author iuc
date Tue, 30 Jul 2024 15:41:16 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/taxonomic_analysis_lsu_rrna/MGYS00002316_metadata.tsv	Tue Jul 30 15:41:16 2024 +0000
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+analysis_id	name	group_type	description	download_url	pipeline_version	experiment_type
+MGYA00153745	OFEK01.Archaea_SRP.RF01857.fa	non-coding RNAs	Predicted Archaea SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Archaea_SRP.RF01857.fa	4.1	assembly
+MGYA00153745	OFEK01.Bacteria_large_SRP.RF01854.fa	non-coding RNAs	Predicted Bacteria large SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Bacteria_large_SRP.RF01854.fa	4.1	assembly
+MGYA00153745	OFEK01.Bacteria_small_SRP.RF00169.fa	non-coding RNAs	Predicted Bacteria small SRP RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.Bacteria_small_SRP.RF00169.fa	4.1	assembly
+MGYA00153745	OFEK01.LSU_rRNA_archaea.RF02540.fa	non-coding RNAs	Predicted Archaeal LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.LSU_rRNA_archaea.RF02540.fa	4.1	assembly
+MGYA00153745	OFEK01.beta_tmRNA.RF01850.fa	non-coding RNAs	Predicted beta tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.beta_tmRNA.RF01850.fa	4.1	assembly
+MGYA00153745	OFEK01_FASTA.fasta.gz	Sequence data	Processed contigs	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_CDS_annotated.faa.gz	Sequence data	Predicted CDS with annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_CDS_annotated.faa.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_CDS_unannotated.faa.gz	Sequence data	Predicted CDS without annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_CDS_unannotated.faa.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_GO.csv	Functional analysis	Complete GO annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_GO.csv	4.1	assembly
+MGYA00153745	OFEK01_FASTA_GO_slim.csv	Functional analysis	GO slim annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_GO_slim.csv	4.1	assembly
+MGYA00153745	OFEK01_FASTA_InterPro.tsv.gz	Functional analysis	InterPro matches	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_InterPro.tsv.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_LSU.fasta.gz	Taxonomic analysis LSU rRNA	Contigs encoding LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_LSU_MAPSeq.mseq.gz	Taxonomic analysis LSU rRNA	MAPseq LSU assignments	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_MAPSeq.mseq.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_LSU_OTU.tsv	Taxonomic analysis LSU rRNA	Contigs encoding LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU.tsv	4.1	assembly
+MGYA00153745	OFEK01_FASTA_LSU_OTU_TABLE_HDF5.biom	Taxonomic analysis LSU rRNA	OTUs, counts and taxonomic assignments for LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU_TABLE_HDF5.biom	4.1	assembly
+MGYA00153745	OFEK01_FASTA_LSU_OTU_TABLE_JSON.biom	Taxonomic analysis LSU rRNA	OTUs, counts and taxonomic assignments for LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_LSU_OTU_TABLE_JSON.biom	4.1	assembly
+MGYA00153745	OFEK01_FASTA_ORF_unannotated.ffn.gz	Sequence data	Predicted ORF without annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_ORF_unannotated.ffn.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_SSU.fasta.gz	Taxonomic analysis SSU rRNA	Contigs encoding SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_SSU_MAPSeq.mseq.gz	Taxonomic analysis SSU rRNA	MAPseq SSU assignments	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_MAPSeq.mseq.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_SSU_OTU.tsv	Taxonomic analysis SSU rRNA	Contigs encoding SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU.tsv	4.1	assembly
+MGYA00153745	OFEK01_FASTA_SSU_OTU_TABLE_HDF5.biom	Taxonomic analysis SSU rRNA	OTUs, counts and taxonomic assignments for SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU_TABLE_HDF5.biom	4.1	assembly
+MGYA00153745	OFEK01_FASTA_SSU_OTU_TABLE_JSON.biom	Taxonomic analysis SSU rRNA	OTUs, counts and taxonomic assignments for SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_SSU_OTU_TABLE_JSON.biom	4.1	assembly
+MGYA00153745	OFEK01_FASTA_interproscan.fasta.gz	Sequence data	Processed contigs with annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_interproscan.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_noFunction.fasta.gz	Sequence data	Processed contigs without annotation	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_noFunction.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01_FASTA_readsWithpCDS.fasta.gz	Sequence data	Processed contigs with pCDS	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01_FASTA_readsWithpCDS.fasta.gz	4.1	assembly
+MGYA00153745	OFEK01.LSU_rRNA_bacteria.RF02541.fa	non-coding RNAs	Predicted Bacterial LSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.LSU_rRNA_bacteria.RF02541.fa	4.1	assembly
+MGYA00153745	OFEK01.RNaseP_arch.RF00373.fa	non-coding RNAs	Predicted Archaeal RNase P RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_arch.RF00373.fa	4.1	assembly
+MGYA00153745	OFEK01.RNaseP_bact_a.RF00010.fa	non-coding RNAs	Predicted Bacterial RNase P class A RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_bact_a.RF00010.fa	4.1	assembly
+MGYA00153745	OFEK01.RNaseP_bact_b.RF00011.fa	non-coding RNAs	Predicted Bacterial RNase P class B RNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.RNaseP_bact_b.RF00011.fa	4.1	assembly
+MGYA00153745	OFEK01.SSU_rRNA_archaea.RF01959.fa	non-coding RNAs	Predicted Archaeal SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_archaea.RF01959.fa	4.1	assembly
+MGYA00153745	OFEK01.SSU_rRNA_bacteria.RF00177.fa	non-coding RNAs	Predicted Bacterial SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_bacteria.RF00177.fa	4.1	assembly
+MGYA00153745	OFEK01.SSU_rRNA_eukarya.RF01960.fa	non-coding RNAs	Predicted Eukaryotic SSU rRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.SSU_rRNA_eukarya.RF01960.fa	4.1	assembly
+MGYA00153745	OFEK01.tRNA-Sec.RF01852.fa	non-coding RNAs	Predicted tRNA-Sec	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tRNA-Sec.RF01852.fa	4.1	assembly
+MGYA00153745	OFEK01.tRNA.RF00005.fa	non-coding RNAs	Predicted tRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tRNA.RF00005.fa	4.1	assembly
+MGYA00153745	OFEK01.tmRNA.RF00023.fa	non-coding RNAs	Predicted tmRNA	https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00153745/file/OFEK01.tmRNA.RF00023.fa	4.1	assembly