mirnature: test-data/test_all_homology.txt annotate

annotate test-data/test_all_homology.txt @ 0:dd2f87ccbd2c draft default tip

planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0

author	iuc
date	Sun, 11 Dec 2022 22:28:10 +0000
parents
children

rev	line source
0 dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	1
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	2 .__________________________________________________________________________.
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	3 \| \|
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	4 \|________________________________________________.........---------........\|
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	5 .--. . . . . ._________________________.
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	6 o \| )\|\ \| / \ _\|_ \| \|
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	7 .--.--. . \|--' \| \ \| /___\ \| . . .--..-. \|........---------........\|
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	8 \| \| \| \| \| \ \| \\| / \ \| \| \| \| (.-' ._______. ._______.
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	9 ' ' `--' `-' `' '' ``-'`--`-' `--' \|.......\| \|.......\|
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	10 Computational detection of microRNA candidates
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	11 v.1.1 Sept 21th, 2022
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	12 Cristian A. Velandia-Huerto, Jöerg Fallmann, Peter F. Stadler
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	13 Bioinformatics Leipzig
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	14 University of Leipzig
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	15
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	16 [2m[34m[PROCESS] Generating a carbon-copy of your Unsp genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	17 [0m[0m[1m[32m[RESULT] I am ready to run miRNAture
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	18 [0m[0m[2m[34m[PROCESS] The dataset_23.dat covariance list is correctly defined
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	19 [0m[0m[2m[34m[PROCESS] Processing: dataset_23.dat models on Unknown_species genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	20 [0m[0m[2m[34m[PROCESS] Running Mode: blast searches
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	21 [0m[0m[2m[34m[PROCESS] Generating BLAST DB for the target genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	22 [0m[0m[2m[34m[PROCESS] Running on strategy 8
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	23 [0m[0m[2m[34m[PROCESS] Cleaning miRNA homologs from Unknown species
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	24 [0m[0m[2m[34m[PROCESS] Structural evaluation of strategy 8 complete
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	25 [0m[0m[2m[34m[PROCESS] Running on strategy 9
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	26 [0m[0m[2m[34m[PROCESS] Cleaning miRNA homologs from Unknown species
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	27 [0m[0m[2m[34m[PROCESS] Structural evaluation of strategy 9 complete
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	28 [0m[0m[2m[34m[PROCESS] Running on strategy ALL
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	29 [0m[0m[2m[34m[PROCESS] Merging candidates on blast
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	30 [0m[0m[2m[34m[PROCESS] The dataset_23.dat covariance list is correctly defined
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	31 [0m[0m[2m[34m[PROCESS] Processing: dataset_23.dat models on Unknown_species genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	32 [0m[0m[2m[34m[PROCESS] Running hmm searches mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	33 [0m[0m[2m[34m[PROCESS] Merging candidates on hmm
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	34 [0m[0m[2m[34m[PROCESS] The dataset_23.dat covariance list is correctly defined
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	35 [0m[0m[2m[34m[PROCESS] Processing: dataset_23.dat models on Unknown_species genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	36 [0m[0m[2m[34m[PROCESS] Running rfam searches mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	37 [0m[0m[2m[34m[PROCESS] Merging candidates on rfam
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	38 [0m[0m[2m[34m[PROCESS] The dataset_23.dat covariance list is correctly defined
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	39 [0m[0m[2m[34m[PROCESS] Processing: dataset_23.dat models on Unknown_species genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	40 [0m[0m[2m[34m[PROCESS] Running Mode: mirbase searches
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	41 [0m[0m[2m[34m[PROCESS] Merging candidates on mirbase
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	42 [0m[0m[2m[34m[PROCESS] The dataset_23.dat covariance list is correctly defined
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	43 [0m[0m[2m[34m[PROCESS] Processing: dataset_23.dat models on Unknown_species genome
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	44 [0m[0m[2m[34m[PROCESS] Merging candidates on final
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	45 [0m[0m[2m[34m[PROCESS] Refining final candidates on Unsp
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	46 [0m[0m[1m[32m[RESULT] Detected homology candidates by blast mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	47 [0m[0m[1m[32m[RESULT] Detected homology candidates by hmm mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	48 [0m[0m[1m[32m[RESULT] Detected homology candidates by rfam mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	49 [0m[0m[1m[32m[RESULT] Detected homology candidates by mirbase mode
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	50 [0m[0m[2m[34m[PROCESS] Cleaning temporal files...
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	51 [0m[0m[1m[97m[END]
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	52 -¿Olvida usted algo?-
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	53 ¡Ojalá!.
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	54
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	55 El emigrante. Luis Felipe Lornelí. (2005)
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	56
dd2f87ccbd2c planemo upload for repository https://github.com/Bierinformatik/miRNAture commit 9e4e624a3a486cbd805bc3beb00e9903f315efe0 iuc parents: diff changeset	57 [0m[0m

Mercurial > repos > iuc > mirnature

annotate test-data/test_all_homology.txt @ 0:dd2f87ccbd2c draft default tip