Mercurial > repos > iuc > ont_fast5_api_multi_to_single_fast5
comparison multi_to_single_fast5.xml @ 0:1a37f742e7d7 draft
"planemo upload for repository https://github.com/nanoporetech/ont_fast5_api/ commit a5d038871ff0e1b133039b59183dee795449b383"
author | iuc |
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date | Fri, 12 Jun 2020 15:07:40 -0400 |
parents | |
children | 68fc6a9c05df |
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-1:000000000000 | 0:1a37f742e7d7 |
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1 <?xml version="1.0"?> | |
2 <tool id="ont_fast5_api_multi_to_single_fast5" name="@TOOL_NAME@ Multi to single" version="@TOOL_VERSION@+galaxy0" profile="18.01"> | |
3 <description>read file(s)</description> | |
4 <macros> | |
5 <import>macros.xml</import> | |
6 </macros> | |
7 <expand macro="requirements"/> | |
8 <version_command><![CDATA[multi_to_single_fast5 -v]]></version_command> | |
9 <command detect_errors="exit_code"><![CDATA[ | |
10 ## initialize | |
11 @INITIALIZE@ | |
12 | |
13 ## run | |
14 multi_to_single_fast5 | |
15 ## required | |
16 @INPUTPATH@ | |
17 @SAVEPATH@ | |
18 ## optional | |
19 @THREADS@ | |
20 | |
21 ## create tarball | |
22 @TARBALL@ | |
23 ]]></command> | |
24 <inputs> | |
25 <expand macro="input"/> | |
26 </inputs> | |
27 <outputs> | |
28 <expand macro="output"/> | |
29 </outputs> | |
30 <tests> | |
31 <!-- #1 default --> | |
32 <test expect_num_outputs="1"> | |
33 <param name="input_path" value="multi.fast5.tar"/> | |
34 <output name="out_results"> | |
35 <assert_contents> | |
36 <has_size value="71680"/> | |
37 </assert_contents> | |
38 </output> | |
39 </test> | |
40 </tests> | |
41 <help><![CDATA[ | |
42 .. class:: infomark | |
43 | |
44 **What it does** | |
45 | |
46 @WID@ | |
47 | |
48 *multi_to_single_fast5* converts multi read FAST5 file(s) into single read FAST5 files. | |
49 | |
50 **Input** | |
51 | |
52 Multi read file(s) in FAST5 format that are stored in a flat TAR. | |
53 | |
54 **Output** | |
55 | |
56 Single read FAST5 files that are stored in a flat TAR. | |
57 | |
58 .. class:: infomark | |
59 | |
60 **References** | |
61 | |
62 @REFERENCES@ | |
63 ]]></help> | |
64 <expand macro="citations"/> | |
65 </tool> |