Mercurial > repos > iuc > orthofinder_onlygroups

annotate test-data/results_fromblast/Statistics_Overall.tsv @ 9:b3d25fae5389 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 179e3fd2aeb66484e49e6370e9507e24d118f4ea
author iuc
date Mon, 15 Jan 2024 10:18:14 +0000
parents 974d8c28e586
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
1 Number of species 4
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
2 Number of genes 2733
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
3 Number of genes in orthogroups 2276
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
4 Number of unassigned genes 457
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
5 Percentage of genes in orthogroups 83.3
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
6 Percentage of unassigned genes 16.7
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
7 Number of orthogroups 622
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
8 Number of species-specific orthogroups 96
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
9 Number of genes in species-specific orthogroups 426
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
10 Percentage of genes in species-specific orthogroups 15.6
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
11 Mean orthogroup size 3.7
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
12 Median orthogroup size 4.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
13 G50 (assigned genes) 4
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
14 G50 (all genes) 4
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
15 O50 (assigned genes) 221
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
16 O50 (all genes) 278
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
17 Number of orthogroups with all species present 278
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
18 Number of single-copy orthogroups 249
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
19 Date 2020-08-14
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
20 Orthogroups file Orthogroups.tsv
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
21 Unassigned genes file Orthogroups_UnassignedGenes.tsv
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
22 Per-species statistics Statistics_PerSpecies.tsv
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
23 Overall statistics Statistics_Overall.tsv
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
24 Orthogroups shared between species Orthogroups_SpeciesOverlaps.tsv
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
25
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
26 Average number of genes per-species in orthogroup Number of orthogroups Percentage of orthogroups Number of genes Percentage of genes
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
27 <1 285 45.8 672 29.5
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
28 '1 322 51.8 1352 59.4
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
29 '2 8 1.3 73 3.2
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
30 '3 4 0.6 56 2.5
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
31 '4 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
32 '5 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
33 '6 1 0.2 26 1.1
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
34 '7 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
35 '8 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
36 '9 1 0.2 39 1.7
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
37 '10 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
38 11-15 1 0.2 58 2.5
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
39 16-20 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
40 21-50 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
41 51-100 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
42 101-150 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
43 151-200 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
44 201-500 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
45 501-1000 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
46 '1001+ 0 0.0 0 0.0
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
47
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
48 Number of species in orthogroup Number of orthogroups
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
49 1 96
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
50 2 173
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
51 3 75
974d8c28e586 "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/orthofinder commit 8fb4e5b2821a83fda89ac616b32726714962717c"
iuc
parents:
diff changeset
52 4 278