0
|
1 <?xml version="1.0"?>
|
|
2 <tool_dependency>
|
|
3 <package name="diamond" version="0.6.13">
|
|
4 <install version="1.0">
|
|
5 <actions_group>
|
|
6 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
|
|
7 <actions os="linux" architecture="x86_64">
|
|
8 <action type="download_by_url">http://www-ab.informatik.uni-tuebingen.de/data/software/diamond/download/public/diamond-linux64.tar.gz</action>
|
|
9 <action type="move_file">
|
|
10 <source>diamond</source>
|
|
11 <destination>$INSTALL_DIR</destination>
|
|
12 </action>
|
|
13 </actions>
|
|
14 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
|
|
15 <actions>
|
|
16 <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action>
|
|
17 <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action>
|
|
18 <action type="shell_command">false</action>
|
|
19 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
|
|
20 </actions>
|
|
21 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
|
|
22 <action type="set_environment">
|
|
23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
24 <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
|
|
25 </action>
|
|
26 </actions_group>
|
|
27 </install>
|
|
28 <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
|
|
29 </package>
|
|
30 </tool_dependency>
|
|
31
|
|
32
|
|
33
|