Mercurial > repos > iuc > package_diamond_0_6_13
view tool_dependencies.xml @ 1:af3605b68204 draft default tip
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author | iuc |
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date | Wed, 13 Apr 2016 14:16:37 -0400 |
parents | 47c4dfd5aed5 |
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<?xml version="1.0"?> <tool_dependency> <package name="diamond" version="0.6.13"> <install version="1.0"> <actions_group> <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. --> <actions os="linux" architecture="x86_64"> <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/diamond/0.6.13/diamond-linux64.tar.gz</action> <action type="move_file"> <source>diamond</source> <destination>$INSTALL_DIR</destination> </action> </actions> <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> <actions> <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action> <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action> <action type="shell_command">false</action> <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> </actions> <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> <action type="set_environment"> <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> </action> </actions_group> </install> <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme> </package> </tool_dependency>