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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="diamond" version="0.6.13">
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4 <install version="1.0">
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5 <actions_group>
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6 <!-- Download the binaries for BLAST+ compatible with 64-bit Linux. -->
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7 <actions os="linux" architecture="x86_64">
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8 <action type="download_by_url">https://github.com/bgruening/download_store/raw/master/diamond/0.6.13/diamond-linux64.tar.gz</action>
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9 <action type="move_file">
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10 <source>diamond</source>
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11 <destination>$INSTALL_DIR</destination>
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12 </action>
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13 </actions>
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14 <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. -->
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15 <actions>
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16 <action type="shell_command">echo "ERROR: Automated installation is currently not supported."</action>
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17 <action type="shell_command">echo "Please report this via https://github.com/bgruening/galaxytools/issues - thank you!"</action>
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18 <action type="shell_command">false</action>
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19 <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install -->
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20 </actions>
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21 <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. -->
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22 <action type="set_environment">
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23 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
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24 <environment_variable name="DIAMOND_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable>
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25 </action>
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26 </actions_group>
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27 </install>
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28 <readme>DIAMOND is a new high-throughput program for aligning a file of short reads against a protein reference database such as NR, at 20,000 times the speed of BLASTX, with high sensitivity</readme>
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29 </package>
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30 </tool_dependency>
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