Mercurial > repos > iuc > package_ncbi_vdb_2_5_2

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
author iuc
date Tue, 01 Mar 2016 07:08:58 -0500
parents b980182ad267
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b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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1 <?xml version="1.0"?>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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2 <tool_dependency>
1
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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3 <package name="perl" version="5.18.1">
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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4 <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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5 </package>
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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6 <package name="libxml2" version="2.9.3">
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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7 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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8 </package>
0
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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9 <package name="ngs_sdk" version="1.1.3">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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10 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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11 </package>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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12 <package name="ncbi_vdb" version="2.5.2">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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13 <install version="1.0">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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14 <actions>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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15 <action target_filename="ncbi-vdb-2.5.2.tar.gz" type="download_by_url">https://github.com/ncbi/ncbi-vdb/archive/2.5.2.tar.gz</action>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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16 <action type="set_environment_for_install">
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17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
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17 <repository changeset_revision="03f5951a9855" name="package_perl_5_18" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
0
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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18 <package name="perl" version="5.18.1" />
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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19 </repository>
1
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
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20 <repository changeset_revision="7fc6b62d43e3" name="package_libxml2_2_9_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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21 <package name="libxml2" version="2.9.3" />
17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
iuc
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22 </repository>
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b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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23 <repository changeset_revision="1197d3c98375" name="package_ngs_sdk_1_1_3" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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24 <package name="ngs_sdk" version="1.1.3" />
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
iuc
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25 </repository>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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26 </action>
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17ae6c0040ea planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit 09fa2b6129e5d156e22b07287b0c3bb61ac41328
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27 <action type="autoconf">--prefix=$INSTALL_DIR --with-ngs-sdk-prefix=$NGS_SDK_DIR --with-xml2-prefix=$LIBXML2_ROOT_DIR --build=$INSTALL_DIR</action>
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b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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28 <action type="move_directory_files">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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29 <source_directory>.</source_directory>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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30 <destination_directory>$INSTALL_DIR/</destination_directory>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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31 </action>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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32 <action type="set_environment">
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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33 <environment_variable action="set_to" name="NCBI_VDB_DIR">$INSTALL_DIR</environment_variable>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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34 </action>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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35 </actions>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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36 </install>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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37 <readme>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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38 ncbi-vdb, required for sra-tools package.
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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39 </readme>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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40 </package>
b980182ad267 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_ncbi_vdb_2_5_2 commit d555f296be01d0c0fa5ac28d28a48cf4ada98297
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41 </tool_dependency>