Mercurial > repos > iuc > package_scikit_learn_0_15
changeset 0:25b635f2eaa5 draft
Imported from capsule None
| author | iuc |
|---|---|
| date | Thu, 09 Oct 2014 05:20:55 -0400 |
| parents | |
| children | 8e53bbb04516 |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 55 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Oct 09 05:20:55 2014 -0400 @@ -0,0 +1,55 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="numpy" version="1.9"> + <repository changeset_revision="03eea94e534e" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="scipy" version="0.14"> + <repository changeset_revision="36b2ca3477c2" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="matplotlib" version="1.2.1"> + <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="scikit_learn" version="0.15"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz#md5=d9822ad0238e17b382a3c756ea94fe0d</action> + <action type="set_environment_for_install"> + <repository changeset_revision="03eea94e534e" name="package_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="numpy" version="1.9" /> + </repository> + <repository changeset_revision="36b2ca3477c2" name="package_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="scipy" version="0.14" /> + </repository> + <repository changeset_revision="fe60617380df" name="package_matplotlib_1_2" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="matplotlib" version="1.2.1" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action language="cheetah" type="template_command"> + export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python && + + export PATH=\$PATH:$env.PATH_NUMPY && + export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB && + + python setup.py install --install-lib $env.INSTALL_DIR/lib/python + </action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable> + <environment_variable action="prepend_to" name="PATH">$ENV[PATH_SCIPY]</environment_variable> + <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_MATPLOTLIB]</environment_variable> + <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme> + Compiling scikit-learn requires a C compiler (typically gcc). + The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN. + + Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies + </readme> + </package> +</tool_dependency>