Mercurial > repos > iuc > package_tophat_2_0_14
comparison tool_dependencies.xml @ 3:536f7bb5616d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit 93bd8341966e13b91bbcb2b9bce75f0c0e7e1d92
| author | iuc |
|---|---|
| date | Thu, 14 May 2015 10:24:01 -0400 |
| parents | 7e9f2c0ccf89 |
| children | b13271391f95 |
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| 2:7e9f2c0ccf89 | 3:536f7bb5616d |
|---|---|
| 7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action> | 7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action> |
| 8 <action type="move_directory_files"> | 8 <action type="move_directory_files"> |
| 9 <source_directory>.</source_directory> | 9 <source_directory>.</source_directory> |
| 10 <destination_directory>$INSTALL_DIR</destination_directory> | 10 <destination_directory>$INSTALL_DIR</destination_directory> |
| 11 </action> | 11 </action> |
| 12 <action type="shell_command">sed -i.bak 's#/build/dest#$INSTALL_DIR#' $INSTALL_DIR/bin/tophat2</action> | |
| 12 </actions> | 13 </actions> |
| 13 <actions> | 14 <actions> |
| 14 <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz</action> | 15 <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz</action> |
| 15 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> | 16 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> |
| 16 <action type="make_install" /> | 17 <action type="make_install" /> |