Mercurial > repos > iuc > package_tophat_2_0_14
annotate tool_dependencies.xml @ 3:536f7bb5616d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit 93bd8341966e13b91bbcb2b9bce75f0c0e7e1d92
author | iuc |
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date | Thu, 14 May 2015 10:24:01 -0400 |
parents | 7e9f2c0ccf89 |
children | b13271391f95 |
rev | line source |
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0 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="tophat" version="2.0.14"> | |
4 <install version="1.0"> | |
5 <actions_group> | |
6 <actions architecture="x86_64" os="linux"> | |
7 <action type="download_by_url">https://depot.galaxyproject.org/package/linux/x86_64/tophat/tophat-2.0.14-Linux-x86_64.tar.gz</action> | |
8 <action type="move_directory_files"> | |
9 <source_directory>.</source_directory> | |
2 | 10 <destination_directory>$INSTALL_DIR</destination_directory> |
0 | 11 </action> |
3
536f7bb5616d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_tophat_2_0_14 commit 93bd8341966e13b91bbcb2b9bce75f0c0e7e1d92
iuc
parents:
2
diff
changeset
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12 <action type="shell_command">sed -i.bak 's#/build/dest#$INSTALL_DIR#' $INSTALL_DIR/bin/tophat2</action> |
0 | 13 </actions> |
14 <actions> | |
1 | 15 <action type="download_by_url">http://ccb.jhu.edu/software/tophat/downloads/tophat-2.0.14.tar.gz</action> |
0 | 16 <action type="shell_command">./configure --prefix=$INSTALL_DIR</action> |
17 <action type="make_install" /> | |
18 </actions> | |
19 <action type="set_environment"> | |
20 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> | |
21 </action> | |
22 </actions_group> | |
23 </install> | |
24 <readme /> | |
25 </package> | |
26 </tool_dependency> |