annotate test-data/rnaseq_qc_results_default.txt @ 0:e020be4f281b draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit b4d43001cc0caa14d760c347fa1c416929f769b2"

RNA-Seq QC report
-----------------------------------

>>>>>>> Input

    bam file = /tmp/tmp_CFvEQ/files/000/dataset_1.dat
    gff file = /tmp/tmp_CFvEQ/files/000/dataset_2.dat
    counting algorithm = uniquely-mapped-reads
    protocol = non-strand-specific


>>>>>>> Reads alignment

    reads aligned  = 100
    total alignments = 101
    secondary alignments = 1
    non-unique alignments = 2
    aligned to genes  = 54
    ambiguous alignments = 0
    no feature assigned = 45
    not aligned = 0
    SSP estimation (fwd/rev) = 0.59 / 0.41


>>>>>>> Reads genomic origin

    exonic =  54 (54.55%)
    intronic = 0 (0%)
    intergenic = 45 (45.45%)
    overlapping exon = 0 (0%)


>>>>>>> Transcript coverage profile

    5' bias = NaN
    3' bias = NaN
    5'-3' bias = NaN


>>>>>>> Junction analysis

    reads at junctions = 52

    CTTT : 48.08%
    CCAC : 48.08%
    GCAC : 1.92%
    CTAC : 1.92%