annotate test-data/rnaseq_qc_results_custom.txt @ 2:e38af83df163 draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/qualimap commit 3c0443b29b1fac5ec193912b0c03a79d75ba731a"

RNA-Seq QC report
-----------------------------------

>>>>>>> Input

    bam file = /private/var/folders/df/6xqpqpcd7h73b6jpx9t6cwhw0000gn/T/tmptyfj3_ok/files/a/c/2/dataset_ac26f0bf-aca4-4645-9270-5f74e2f0dffb.dat
    gff file = features.gtf
    counting algorithm = proportional
    protocol = strand-specific-forward
    5'-3' bias region size = 100
    5'-3' bias number of top transcripts = 1000


>>>>>>> Reads alignment

    reads aligned (left/right) = 0 / 0
    read pairs aligned  = 0
    total alignments = 101
    secondary alignments = 1
    non-unique alignments = 0
    aligned to genes  = 46
    ambiguous alignments = 0
    no feature assigned = 55
    not aligned = 0


>>>>>>> Reads genomic origin

    exonic =  46 (45.54%)
    intronic = 0 (0%)
    intergenic = 55 (54.46%)
    overlapping exon = 0 (0%)


>>>>>>> Transcript coverage profile

    5' bias = NaN
    3' bias = NaN
    5'-3' bias = NaN


>>>>>>> Junction analysis

    reads at junctions = 53

    CTTT : 47.17%
    CCAC : 47.17%
    GCAC : 1.89%
    CTAC : 1.89%
    GAAT : 1.89%