Mercurial > repos > iuc > quast
annotate test-data/test5.tab @ 15:72472698a2df draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 617a2c388e73d6c93a2a1db9a58b914510052b69
author | iuc |
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date | Thu, 02 Mar 2023 10:38:54 +0000 |
parents | 3061c8b029e5 |
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rev | line source |
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9
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
1 Assembly contig1 contig2 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
2 # contigs (>= 0 bp) 3 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
3 # contigs (>= 1000 bp) 3 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
4 Total length (>= 0 bp) 6710 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
5 Total length (>= 1000 bp) 6710 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
6 # contigs 3 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
7 Largest contig 3980 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
8 Total length 6710 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
9 Reference length 6650 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
10 GC (%) 51.28 52.00 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
11 Reference GC (%) 52.00 52.00 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
12 N50 3980 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
13 NG50 3980 6650 |
14
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
14 N90 1120 6650 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
15 NG90 1120 6650 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
16 auN 2934.0 6650.0 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
17 auNG 2960.4 6650.0 |
9
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
18 L50 1 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
19 LG50 1 1 |
14
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
20 L90 3 1 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
21 LG90 3 1 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
22 # total reads 330 330 |
9
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
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23 # left 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
24 # right 0 0 |
14
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
25 Mapped (%) 2.73 2.42 |
9
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
26 Reference mapped (%) 2.42 2.42 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
27 Properly paired (%) 0.0 0.0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
28 Reference properly paired (%) 0.0 0.0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
29 Avg. coverage depth 0 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
30 Reference avg. coverage depth 1 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
31 Coverage >= 1x (%) 42.22 48.17 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
32 Reference coverage >= 1x (%) 48.17 48.17 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
33 # misassemblies 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
34 # misassembled contigs 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
35 Misassembled contigs length 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
36 # local misassemblies 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
37 # scaffold gap ext. mis. 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
38 # scaffold gap loc. mis. 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
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39 # unaligned mis. contigs 0 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
40 # unaligned contigs 0 + 1 part 0 + 0 part |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
41 Unaligned length 1950 0 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
42 Genome fraction (%) 71.579 100.000 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
43 Duplication ratio 1.000 1.000 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
44 # N's per 100 kbp 0.00 0.00 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
45 # mismatches per 100 kbp 0.00 0.00 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
46 # indels per 100 kbp 0.00 0.00 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
47 Largest alignment 2030 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
48 Total aligned length 4760 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
49 NA50 1610 6650 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
50 NGA50 1610 6650 |
14
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
51 NA90 - 6650 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
52 NGA90 - 6650 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
53 auNA 1187.4 6650.0 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
54 auNGA 1198.1 6650.0 |
9
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
55 LA50 2 1 |
45924fa8d8c5
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
iuc
parents:
diff
changeset
|
56 LGA50 2 1 |
14
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
57 LA90 - 1 |
3061c8b029e5
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit b4d6989e1e185120ce470df5c2b0d93330d5e124
iuc
parents:
9
diff
changeset
|
58 LGA90 - 1 |