Mercurial > repos > iuc > quast
comparison test-data/test1_output.tsv @ 4:0834c823d4b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
author | iuc |
---|---|
date | Mon, 12 Feb 2018 09:05:20 -0500 |
parents | |
children | 81df4950d65b |
comparison
equal
deleted
inserted
replaced
3:6fcbee531de6 | 4:0834c823d4b9 |
---|---|
1 Assembly contigs2_fna contigs1_fna | |
2 # contigs (>= 0 bp) 1 3 | |
3 # contigs (>= 1000 bp) 1 3 | |
4 Total length (>= 0 bp) 6650 6710 | |
5 Total length (>= 1000 bp) 6650 6710 | |
6 # contigs 1 3 | |
7 Largest contig 6650 3980 | |
8 Total length 6650 6710 | |
9 Reference length 6650 6650 | |
10 GC (%) 52.00 51.28 | |
11 Reference GC (%) 52.00 52.00 | |
12 N50 6650 3980 | |
13 NG50 6650 3980 | |
14 N75 6650 1610 | |
15 NG75 6650 1610 | |
16 L50 1 1 | |
17 LG50 1 1 | |
18 L75 1 2 | |
19 LG75 1 2 | |
20 # misassemblies 0 0 | |
21 # misassembled contigs 0 0 | |
22 Misassembled contigs length 0 0 | |
23 # local misassemblies 0 0 | |
24 # unaligned mis. contigs 0 0 | |
25 # unaligned contigs 0 + 0 part 0 + 1 part | |
26 Unaligned length 0 1950 | |
27 Genome fraction (%) 100.000 71.579 | |
28 Duplication ratio 1.000 1.000 | |
29 # N's per 100 kbp 0.00 0.00 | |
30 # mismatches per 100 kbp 0.00 0.00 | |
31 # indels per 100 kbp 0.00 0.00 | |
32 # genes 6 + 0 part 3 + 3 part | |
33 Largest alignment 6650 2030 | |
34 Total aligned length 6650 4760 | |
35 NA50 6650 1610 | |
36 NGA50 6650 1610 | |
37 NA75 6650 - | |
38 NGA75 6650 - | |
39 LA50 1 2 | |
40 LGA50 1 2 | |
41 LA75 1 - | |
42 LGA75 1 - |