Mercurial > repos > iuc > quast
diff test-data/test1_output.tsv @ 4:0834c823d4b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 2c56b5f07500507dad503aab6ec0619ec37f8b87
| author | iuc |
|---|---|
| date | Mon, 12 Feb 2018 09:05:20 -0500 |
| parents | |
| children | 81df4950d65b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/test1_output.tsv Mon Feb 12 09:05:20 2018 -0500 @@ -0,0 +1,42 @@ +Assembly contigs2_fna contigs1_fna +# contigs (>= 0 bp) 1 3 +# contigs (>= 1000 bp) 1 3 +Total length (>= 0 bp) 6650 6710 +Total length (>= 1000 bp) 6650 6710 +# contigs 1 3 +Largest contig 6650 3980 +Total length 6650 6710 +Reference length 6650 6650 +GC (%) 52.00 51.28 +Reference GC (%) 52.00 52.00 +N50 6650 3980 +NG50 6650 3980 +N75 6650 1610 +NG75 6650 1610 +L50 1 1 +LG50 1 1 +L75 1 2 +LG75 1 2 +# misassemblies 0 0 +# misassembled contigs 0 0 +Misassembled contigs length 0 0 +# local misassemblies 0 0 +# unaligned mis. contigs 0 0 +# unaligned contigs 0 + 0 part 0 + 1 part +Unaligned length 0 1950 +Genome fraction (%) 100.000 71.579 +Duplication ratio 1.000 1.000 +# N's per 100 kbp 0.00 0.00 +# mismatches per 100 kbp 0.00 0.00 +# indels per 100 kbp 0.00 0.00 +# genes 6 + 0 part 3 + 3 part +Largest alignment 6650 2030 +Total aligned length 6650 4760 +NA50 6650 1610 +NGA50 6650 1610 +NA75 6650 - +NGA75 6650 - +LA50 1 2 +LGA50 1 2 +LA75 1 - +LGA75 1 -