Mercurial > repos > iuc > quast
view test-data/test5.tab @ 9:45924fa8d8c5 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/quast commit 9e4867db42282a980f1149711159fa811b2d8414"
| author | iuc |
|---|---|
| date | Mon, 08 Nov 2021 09:03:00 +0000 |
| parents | |
| children | 3061c8b029e5 |
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Assembly contig1 contig2 # contigs (>= 0 bp) 3 1 # contigs (>= 1000 bp) 3 1 Total length (>= 0 bp) 6710 6650 Total length (>= 1000 bp) 6710 6650 # contigs 3 1 Largest contig 3980 6650 Total length 6710 6650 Reference length 6650 6650 GC (%) 51.28 52.00 Reference GC (%) 52.00 52.00 N50 3980 6650 NG50 3980 6650 N75 1610 6650 NG75 1610 6650 L50 1 1 LG50 1 1 L75 2 1 LG75 2 1 # total reads 331 331 # left 0 0 # right 0 0 Mapped (%) 2.72 2.42 Reference mapped (%) 2.42 2.42 Properly paired (%) 0.0 0.0 Reference properly paired (%) 0.0 0.0 Avg. coverage depth 0 1 Reference avg. coverage depth 1 1 Coverage >= 1x (%) 42.22 48.17 Reference coverage >= 1x (%) 48.17 48.17 # misassemblies 0 0 # misassembled contigs 0 0 Misassembled contigs length 0 0 # local misassemblies 0 0 # scaffold gap ext. mis. 0 0 # scaffold gap loc. mis. 0 0 # unaligned mis. contigs 0 0 # unaligned contigs 0 + 1 part 0 + 0 part Unaligned length 1950 0 Genome fraction (%) 71.579 100.000 Duplication ratio 1.000 1.000 # N's per 100 kbp 0.00 0.00 # mismatches per 100 kbp 0.00 0.00 # indels per 100 kbp 0.00 0.00 Largest alignment 2030 6650 Total aligned length 4760 6650 NA50 1610 6650 NGA50 1610 6650 NA75 - 6650 NGA75 - 6650 LA50 2 1 LGA50 2 1 LA75 - 1 LGA75 - 1